NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM383920 Query DataSets for GSM383920
Status Public on Mar 20, 2009
Title SAGE_Muscle_normal_B_young
Sample type SAGE
Anchor NlaIII
Tag Count 53947
Tag Length 10
 
Source name muscle, normal, non-normalized, short SAGE, bulk
Organism Homo sapiens
Characteristics organ/tissue: muscle
tissue preparation: bulk
cell type: normal muscle biopsy of vastus lateralis
other information: Needle muscle biopsies were obtained from the vastus lateralis muscles of 8 healthy young men (21-24 yr) under standard conditions. All were screened fro good health and normal neuromuscular function by a panel of laboratory tests and examination by neuromuscular disease specialist. None were involved in weight lifting or extreme levels of aerobic exercise. They were asked to refrain from activities more strenuous than walking for 3 days before the biopsy. They stayed at the University of Rochester GCRC the night before the biopsy, where they received a standard meal. They received a standard breakfast about 90 min before the biopsy. The tissue was removed whitin a few minutes of administration of the local anesthetic (lidocaine). It was quickly frozen in liquid nitrogen, then stored at -70 deg C until RNA extraction.
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 142
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Muscle_normal_B_young
Laboratory: Stephen Welle, University of Rochester
References: S. Welle, K. Bhatt, C. A. Thornton, Genome Res. 9, 506-13 (1999) [PUBMED=10330131]
 
Submission date Mar 19, 2009
Last update date Mar 30, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 176 3262.46
AAAAAAAAAC 1 18.54
AAAAAAAAAG 6 111.22
AAAAAAAATG 1 18.54
AAAAAAAGCA 1 18.54
AAAAAAAGGT 1 18.54
AAAAAAATAA 1 18.54
AAAAAACAAA 1 18.54
AAAAAACCCC 2 37.07
AAAAAACTCC 4 74.15
AAAAAACTGA 1 18.54
AAAAAAGAAA 2 37.07
AAAAAAGAAG 1 18.54
AAAAAAGACT 1 18.54
AAAAAATAAA 1 18.54
AAAAAATGCT 1 18.54
AAAAAATGGT 2 37.07
AAAAACAACC 4 74.15
AAAAACAAGA 1 18.54
AAAAACATTC 2 37.07

Total number of rows: 12170

Table truncated, full table size 227 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap