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Sample GSM383922 Query DataSets for GSM383922
Status Public on Mar 20, 2009
Title SAGE_Ovary_adenocarcinoma_B_OVT-6
Sample type SAGE
Anchor NlaIII
Tag Count 41443
Tag Length 10
 
Source name ovary, serous, adenocarcinoma, bulk, non-normalized, short SAGE
Organism Homo sapiens
Characteristics organ/tissue: ovary
tissue preparation: bulk
cell type: serous adenocarcinoma
other information: Ovary, primary ovarian tumour, serous adenocarcinoma.
Biomaterial provider Patrice J. Morin
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 23
Tagging_enzyme: BsmF I
Old_library_name: SAGE_OVT-6
Laboratory: Pat Morin, National Institute on Aging, NIH
References: C. D. Hough et al., Cancer Res 60, 6281-7 (2000) [PUBMED=11103784]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 149 3595.30
AAAAAAAAAC 1 24.13
AAAAAAAAAG 2 48.26
AAAAAAAAAT 2 48.26
AAAAAAAAGA 2 48.26
AAAAAAAATA 1 24.13
AAAAAAACTA 1 24.13
AAAAAAAGCA 1 24.13
AAAAAAATAA 1 24.13
AAAAAAATCA 1 24.13
AAAAAACTCC 1 24.13
AAAAAAGAAG 1 24.13
AAAAAAGAGA 1 24.13
AAAAAAGGAG 1 24.13
AAAAAAGTAA 1 24.13
AAAAAAGTTT 1 24.13
AAAAAATAAA 1 24.13
AAAAAATACA 2 48.26
AAAAAATCAA 1 24.13
AAAAAATGAT 1 24.13

Total number of rows: 18440

Table truncated, full table size 343 Kbytes.




Supplementary data files not provided

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