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Sample GSM383925

Query DataSets for GSM383925

Status

Public on Mar 20, 2009

Title

SAGE_Ovary_carcinoma_CL_A2780

Sample type

SAGE

Anchor

NlaIII

Tag Count

21369

Tag Length

Source name

ovary, carcinoma, cell line, non-normalized, short SAGE

Organism

Homo sapiens

Characteristics

organ/tissue: ovary
tissue preparation: cell line
cell type: carcinoma
other information: Ovary, ovarian cancer cell line A2780

Biomaterial provider

Vilhem Bohr, National Inst. on Aging

Extracted molecule

total RNA

Extraction protocol

N/A

Description

CGAP_Numeric_library_ID: 39
Tagging_enzyme: BsmF I
Old_library_name: SAGE_A2780-9
Library_producer: Colleen Hough
Laboratory: Pat Morin, National Institute on Aging, NIH
References: C. D. Hough et al., Cancer Res 60, 6281-7 (2000) [PUBMED=11103784]

Submission date

Mar 19, 2009

Last update date

Mar 20, 2009

Contact name

Cancer Genome Anatomy Project CGAP

E-mail(s)

cgapbs-r@mail.nih.gov

Phone

301-496-1550

URL

http://cgap.nci.nih.gov/

Organization name

National Cancer Institute

Department

Cancer Genome Anatomy Project

Street address

City

Bethesda

State/province

ZIP/Postal code

20852

Country

USA

Platform ID

GPL4

Series (2)

GSE14	Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309	Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM	tags per million

Data table
TAG	COUNT	TPM
AAAAAAAAAA	42	1965.46
AAAAAAAAAC	1	46.80
AAAAAAAAAG	2	93.59
AAAAAAAACA	1	46.80
AAAAAAAATA	1	46.80
AAAAAAACTA	1	46.80
AAAAAACCCA	2	93.59
AAAAAACTAG	1	46.80
AAAAAACTCC	2	93.59
AAAAAAGCTG	1	46.80
AAAAAATACA	1	46.80
AAAAAATGCA	1	46.80
AAAAACAAAA	1	46.80
AAAAACCACT	1	46.80
AAAAACCATA	2	93.59
AAAAACCCTT	1	46.80
AAAAACTATC	1	46.80
AAAAAGAAGA	1	46.80
AAAAAGAGAT	1	46.80
AAAAAGCAAG	1	46.80

Total number of rows: 10675

Table truncated, full table size 199 Kbytes.

Supplementary data files not provided