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Sample GSM383934 Query DataSets for GSM383934
Status Public on Mar 20, 2009
Title SAGE_Pancreas_adenocarcinoma_CL_Panc1
Sample type SAGE
Anchor NlaIII
Tag Count 24749
Tag Length 10
 
Source name pancreas, adenocarcinoma, cell line, non-normalized, short SAGE
Organism Homo sapiens
Characteristics organ/tissue: pancreas
tissue preparation: cell line
cell type: adenocarcinoma
other information: ATCC Library constructed in the Kern laboratory
Biomaterial provider ATCC
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 64
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Panc1
Library_producer: Byung Woo Ryu
Laboratory: Scott Kern, Johns Hopkins Medical Institute
References: B. Ryu et al., Cancer Res 62, 819-26 (2002) [PUBMED=11830538]|P. Argani et al., Cancer Res 61, 4320-4 (2001) [PUBMED=11389052]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 33 1333.39
AAAAAAAAAC 1 40.41
AAAAAAAAAG 1 40.41
AAAAAAACCC 1 40.41
AAAAAAAGAA 1 40.41
AAAAAAAGCC 1 40.41
AAAAAACCCA 3 121.22
AAAAAACTCC 2 80.81
AAAAAACTCT 1 40.41
AAAAAATGAC 1 40.41
AAAAAATGGG 1 40.41
AAAAACCCAG 1 40.41
AAAAAGAAAC 1 40.41
AAAAAGCACA 2 80.81
AAAAAGCAGA 3 121.22
AAAAAGCTGG 1 40.41
AAAAATAAAA 2 80.81
AAAAATAAAC 1 40.41
AAAAATAAAG 1 40.41
AAAAATCTGA 1 40.41

Total number of rows: 10293

Table truncated, full table size 192 Kbytes.




Supplementary data files not provided

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