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Sample GSM383945 Query DataSets for GSM383945
Status Public on Mar 20, 2009
Title SAGE_Placenta_first_trimester_normal_B_1
Sample type SAGE
Anchor NlaIII
Tag Count 89265
Tag Length 10
 
Source name placenta, normal, bulk, non-normalized, short SAGE
Organism Homo sapiens
Characteristics organ/tissue: placenta
tissue preparation: bulk
age: fetal
cell type: normal first trimester placenta
other information: First trimester placenta.
Biomaterial provider C. Oudejans
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 160
Tagging_enzyme: BsmF I
Library_producer: Keith Killian
Laboratory: Gregory Riggins, Duke University Medical Center
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 185 2072.48
AAAAAAAAAC 1 11.20
AAAAAAAAAG 4 44.81
AAAAAAAAAT 2 22.41
AAAAAAAAGA 2 22.41
AAAAAAAAGG 1 11.20
AAAAAAAATA 1 11.20
AAAAAAAATC 1 11.20
AAAAAAAATG 1 11.20
AAAAAAACAA 1 11.20
AAAAAAACCT 1 11.20
AAAAAAAGAA 5 56.01
AAAAAAAGCT 1 11.20
AAAAAAAGGA 1 11.20
AAAAAAAGGG 1 11.20
AAAAAAATAG 1 11.20
AAAAAAATCA 6 67.22
AAAAAAATGT 1 11.20
AAAAAACAAA 1 11.20
AAAAAACCAA 1 11.20

Total number of rows: 26325

Table truncated, full table size 490 Kbytes.




Supplementary data files not provided
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