GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM383947

Query DataSets for GSM383947

Status

Public on Mar 20, 2009

Title

SAGE_Placenta_normal_B_1

Sample type

SAGE

Anchor

NlaIII

Tag Count

118083

Tag Length

Source name

placenta, normal, bulk, non-normalized, short SAGE

Organism

Homo sapiens

Characteristics

organ/tissue: placenta
tissue preparation: bulk
age: newborn
sex: female
cell type: normal term placenta
other information: Full-term placenta.

Biomaterial provider

A. Berchuck

Extracted molecule

total RNA

Extraction protocol

N/A

Description

CGAP_Numeric_library_ID: 161
Tagging_enzyme: BsmF I
Library_producer: Keith Killian
Laboratory: Gregory Riggins, Duke University Medical Center
References: K. Boon et al., Proc Natl Acad Sci U S A 99, 11287-92 (2002) [PUBMED=12119410]

Submission date

Mar 19, 2009

Last update date

Mar 20, 2009

Contact name

Cancer Genome Anatomy Project CGAP

E-mail(s)

cgapbs-r@mail.nih.gov

Phone

301-496-1550

URL

http://cgap.nci.nih.gov/

Organization name

National Cancer Institute

Department

Cancer Genome Anatomy Project

Street address

City

Bethesda

State/province

ZIP/Postal code

20852

Country

USA

Platform ID

GPL4

Series (2)

GSE14	Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309	Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM	tags per million

Data table
TAG	COUNT	TPM
AAAAAAAAAA	521	4412.15
AAAAAAAAAC	4	33.87
AAAAAAAAAG	9	76.22
AAAAAAAAAT	6	50.81
AAAAAAAACT	1	8.47
AAAAAAAAGA	4	33.87
AAAAAAAAGG	3	25.41
AAAAAAAATA	2	16.94
AAAAAAAATC	1	8.47
AAAAAAAATG	1	8.47
AAAAAAAATT	1	8.47
AAAAAAACAA	3	25.41
AAAAAAACCA	1	8.47
AAAAAAACTG	1	8.47
AAAAAAAGAA	10	84.69
AAAAAAAGAC	1	8.47
AAAAAAAGCT	1	8.47
AAAAAAAGGT	1	8.47
AAAAAAATAA	2	16.94
AAAAAAATCA	23	194.78

Total number of rows: 33222

Table truncated, full table size 596 Kbytes.

Supplementary data files not provided