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| Status |
Public on Mar 20, 2009 |
| Title |
SAGE_Prostate_adenocarcinoma_CL_LNCaP |
| Sample type |
SAGE |
| Anchor |
NlaIII
|
| Tag Count |
22344 |
| Tag Length |
10 |
| |
|
| Source name |
prostate, adenocarcinoma, cell line, non-normalized, short SAGE
|
| Organism |
Homo sapiens |
| Characteristics |
organ/tissue: prostate
tissue preparation: cell line
cell type: adenocarcinoma
mutations: Inactivating mutation in PTEN gene
other information: Prostate, cell line. Androgen dependent, inactivating mutation in PTEN gene
|
| Biomaterial provider |
N. Papadopoulos
|
| Extracted molecule |
total RNA |
| Extraction protocol |
N/A
|
| |
|
| Description |
CGAP_Numeric_library_ID: 22
Tagging_enzyme: BsmF I
Old_library_name: SAGE_LNCaP
Laboratory: Nick Papadopoulos, Columbia University
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| |
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| Submission date |
Mar 19, 2009 |
| Last update date |
Mar 20, 2009 |
| Contact name |
Cancer Genome Anatomy Project CGAP |
| E-mail(s) |
cgapbs-r@mail.nih.gov
|
| Phone |
301-496-1550
|
| URL |
http://cgap.nci.nih.gov/
|
| Organization name |
National Cancer Institute
|
| Department |
Cancer Genome Anatomy Project
|
| Street address |
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20852 |
| Country |
USA |
| |
|
| Platform ID |
GPL4 |
| Series (2) |
| GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
| GSE15309 |
Cancer Genome Anatomy Project (CGAP) Human SAGE |
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| Data table header descriptions |
| TAG |
|
| COUNT |
|
| TPM |
tags per million |
| Data table |
| TAG |
COUNT |
TPM |
| AAAAAAAAAA |
120 |
5370.57 |
| AAAAAAAAAC |
1 |
44.75 |
| AAAAAAAAAT |
1 |
44.75 |
| AAAAAAAACT |
2 |
89.51 |
| AAAAAAAAGA |
1 |
44.75 |
| AAAAAAATCC |
1 |
44.75 |
| AAAAAAATTC |
1 |
44.75 |
| AAAAAACAAA |
1 |
44.75 |
| AAAAAACCCA |
3 |
134.26 |
| AAAAAACTCC |
2 |
89.51 |
| AAAAAACTTC |
2 |
89.51 |
| AAAAAATACG |
1 |
44.75 |
| AAAAAATGGA |
1 |
44.75 |
| AAAAACAAGT |
1 |
44.75 |
| AAAAACAATC |
1 |
44.75 |
| AAAAACACCA |
1 |
44.75 |
| AAAAACCATA |
3 |
134.26 |
| AAAAACCATC |
1 |
44.75 |
| AAAAACCCTT |
1 |
44.75 |
| AAAAACTTCT |
1 |
44.75 |
Total number of rows: 9155
Table truncated, full table size 171 Kbytes.
| Supplementary data files not provided |
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