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Status |
Public on Mar 20, 2009 |
Title |
SAGE_Prostate_carcinoma_B_LN-1 |
Sample type |
SAGE |
Anchor |
NlaIII
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Tag Count |
22599 |
Tag Length |
10 |
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Source name |
prostate, carcinoma, non-normalized, short SAGE, bulk
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Organism |
Homo sapiens |
Characteristics |
organ/tissue: prostate tissue preparation: bulk sex: male cell type: carcinoma other information: Prostate, advanced tumor
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Extracted molecule |
total RNA |
Extraction protocol |
N/A
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Description |
CGAP_Numeric_library_ID: 90 Tagging_enzyme: BsmF I Old_library_name: SAGE_LN-1 Laboratory: Nick Papadopoulos, Columbia University
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Submission date |
Mar 19, 2009 |
Last update date |
Mar 20, 2009 |
Contact name |
Cancer Genome Anatomy Project CGAP |
E-mail(s) |
cgapbs-r@mail.nih.gov
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Phone |
301-496-1550
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URL |
http://cgap.nci.nih.gov/
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Organization name |
National Cancer Institute
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Department |
Cancer Genome Anatomy Project
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Street address |
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City |
Bethesda |
State/province |
MD |
ZIP/Postal code |
20852 |
Country |
USA |
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Platform ID |
GPL4 |
Series (2) |
GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
GSE15309 |
Cancer Genome Anatomy Project (CGAP) Human SAGE |
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Data table header descriptions |
TAG |
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COUNT |
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TPM |
tags per million |
Data table |
TAG |
COUNT |
TPM |
AAAAAAAAAA |
22 |
973.49 |
AAAAAAAAAC |
1 |
44.25 |
AAAAAACCCA |
2 |
88.50 |
AAAAAAGAAA |
1 |
44.25 |
AAAACAAAAC |
1 |
44.25 |
AAAACATTCA |
1 |
44.25 |
AAAACATTCT |
7 |
309.75 |
AAAACTACCG |
1 |
44.25 |
AAAACTGCAC |
1 |
44.25 |
AAAACTTAGA |
1 |
44.25 |
AAAACTTTGT |
3 |
132.75 |
AAAAGAAACT |
3 |
132.75 |
AAAAGAATGA |
1 |
44.25 |
AAAAGCAACT |
1 |
44.25 |
AAAAGGAGTG |
1 |
44.25 |
AAAAGTTGGG |
1 |
44.25 |
AAAAGTTTGC |
1 |
44.25 |
AAAATAAAGG |
1 |
44.25 |
AAAATATGTT |
1 |
44.25 |
AAACAAATTT |
1 |
44.25 |
Total number of rows: 10601
Table truncated, full table size 198 Kbytes.
Supplementary data files not provided |
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