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Status
Public on Mar 20, 2009
Title
LSAGE_Bone_Marrow_Cancer_FS_hs0405
Sample type
SAGE
Anchor
NlaIII
Tag Count
4900037
Tag Length
17
Source name
bone marrow, cancer, flow-sorted, long sage, slx-sagelite, solexa sagelite, male, facs-sorted rna from single cml patient lin-cd38-rho-cells
Organism
Homo sapiens
Characteristics
organ/tissue: bone marrow tissue preparation: flow-sorted sex: male cell type: FACS-sorted RNA from single CML patient Lin-CD38-Rho-cells other information: SLX-SAGELite
Biomaterial provider
Connie Eaves Lab, BCCRC
Extracted molecule
total RNA
Extraction protocol
N/A
Description
CGAP_Numeric_library_ID: 2365 Tagging_enzyme: Mme I Library_producer: Martin Hirst, Functional Genomics Lab Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, Canada
Submission date
Mar 19, 2009
Last update date
Mar 20, 2009
Contact name
Cancer Genome Anatomy Project CGAP
E-mail(s)
cgapbs-r@mail.nih.gov
Phone
301-496-1550
URL
http://cgap.nci.nih.gov/
Organization name
National Cancer Institute
Department
Cancer Genome Anatomy Project
Street address
City
Bethesda
State/province
MD
ZIP/Postal code
20852
Country
USA
Platform ID
GPL1485
Series (2)
GSE14
Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15314
Cancer Genome Anatomy Project (CGAP) Human Solexa LongSAGE
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAAAAAAAAA
1178
240.41
AAAAAAAAAAAAAAAAC
44
8.98
AAAAAAAAAAAAAAAAG
8
1.63
AAAAAAAAAAAAAAAAT
83
16.94
AAAAAAAAAAAAAAACA
12
2.45
AAAAAAAAAAAAAAACC
9
1.84
AAAAAAAAAAAAAAACT
5
1.02
AAAAAAAAAAAAAAAGT
4
0.82
AAAAAAAAAAAAAAATA
6
1.22
AAAAAAAAAAAAAAATC
10
2.04
AAAAAAAAAAAAAACAA
3
0.61
AAAAAAAAAAAAAACAC
2
0.41
AAAAAAAAAAAAAAGAA
2
0.41
AAAAAAAAAAAAAATAA
6
1.22
AAAAAAAAAAAAAATAT
2
0.41
AAAAAAAAAAAAACAAA
8
1.63
AAAAAAAAAAAAACAAC
2
0.41
AAAAAAAAAAAAATAAT
3
0.61
AAAAAAAAAAAACAAAA
12
2.45
AAAAAAAAAAAAGAAAA
8
1.63
Total number of rows: 259085 Table truncated, full table size 6389 Kbytes .Supplementary data files not provided