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Sample GSM384044 Query DataSets for GSM384044
Status Public on Mar 20, 2009
Title LSAGE_Bone_Marrow_Cancer_FS_hs0405
Sample type SAGE
Anchor NlaIII
Tag Count 4900037
Tag Length 17
 
Source name bone marrow, cancer, flow-sorted, long sage, slx-sagelite, solexa sagelite, male, facs-sorted rna from single cml patient lin-cd38-rho-cells
Organism Homo sapiens
Characteristics organ/tissue: bone marrow
tissue preparation: flow-sorted
sex: male
cell type: FACS-sorted RNA from single CML patient Lin-CD38-Rho-cells
other information: SLX-SAGELite
Biomaterial provider Connie Eaves Lab, BCCRC
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 2365
Tagging_enzyme: Mme I
Library_producer: Martin Hirst, Functional Genomics Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, Canada
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL1485
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15314 Cancer Genome Anatomy Project (CGAP) Human Solexa LongSAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAAAAAAAAA 1178 240.41
AAAAAAAAAAAAAAAAC 44 8.98
AAAAAAAAAAAAAAAAG 8 1.63
AAAAAAAAAAAAAAAAT 83 16.94
AAAAAAAAAAAAAAACA 12 2.45
AAAAAAAAAAAAAAACC 9 1.84
AAAAAAAAAAAAAAACT 5 1.02
AAAAAAAAAAAAAAAGT 4 0.82
AAAAAAAAAAAAAAATA 6 1.22
AAAAAAAAAAAAAAATC 10 2.04
AAAAAAAAAAAAAACAA 3 0.61
AAAAAAAAAAAAAACAC 2 0.41
AAAAAAAAAAAAAAGAA 2 0.41
AAAAAAAAAAAAAATAA 6 1.22
AAAAAAAAAAAAAATAT 2 0.41
AAAAAAAAAAAAACAAA 8 1.63
AAAAAAAAAAAAACAAC 2 0.41
AAAAAAAAAAAAATAAT 3 0.61
AAAAAAAAAAAACAAAA 12 2.45
AAAAAAAAAAAAGAAAA 8 1.63

Total number of rows: 259085

Table truncated, full table size 6389 Kbytes.




Supplementary data files not provided

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