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GEO accession:
Sample GSM384053
Query DataSets for GSM384053
Status
Public on Mar 20, 2009
Title
LSAGE_Brain_Medulloblastoma_CL_UW228-V2
Sample type
SAGE
Anchor
NlaIII
Tag Count
80827
Tag Length
17
Source name
brain, cell line, medulloblastoma, cancer, long sage, female
Organism
Homo sapiens
Characteristics
organ/tissue: brain
tissue preparation: cell line
age: 9
sex: female
cell type: Medulloblastoma
Biomaterial provider
Dr. John Silber
Extracted molecule
total RNA
Extraction protocol
N/A
Description
CGAP_Numeric_library_ID: 2083
Tagging_enzyme: Mme I
Library_producer: Jennifer B. Edwards
Laboratory: Dr. Gregory Riggins
Submission date
Mar 19, 2009
Last update date
Mar 20, 2009
Contact name
Cancer Genome Anatomy Project CGAP
E-mail(s)
cgapbs-r@mail.nih.gov
Phone
301-496-1550
URL
http://cgap.nci.nih.gov/
Organization name
National Cancer Institute
Department
Cancer Genome Anatomy Project
Street address
City
Bethesda
State/province
MD
ZIP/Postal code
20852
Country
USA
Platform ID
GPL1485
Series (2)
GSE14
Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE1902
Cancer Genome Anatomy Project (CGAP) Human LongSAGE
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAAAAAAAAA
29
358.79
AAAAAAAAAAAAAAAAC
3
37.12
AAAAAAAAAAAAAAAAG
4
49.49
AAAAAAAAAAAAAAAAT
1
12.37
AAAAAAAAAAAAAAACC
1
12.37
AAAAAAAAAAAAAAAGA
1
12.37
AAAAAAAAAAGGCAGGT
1
12.37
AAAAAAAAAATAAAAAA
1
12.37
AAAAAAAACTATGCTGC
1
12.37
AAAAAAAAGAAGTTTTG
2
24.74
AAAAAAAAGGCATCAAC
3
37.12
AAAAAAAATGATTAAAG
1
12.37
AAAAAAAATTCTTTCTC
2
24.74
AAAAAAACAGTGACTTT
2
24.74
AAAAAAACTATGCTGCT
1
12.37
AAAAAAACTTCCTACCA
1
12.37
AAAAAAAGAACTCCACT
1
12.37
AAAAAAAGGAAGTTTTG
1
12.37
AAAAAAAGTTCTGTTCA
1
12.37
AAAAAAATATTAAATAG
1
12.37
Total number of rows:
34482
Table truncated, full table size
877 Kbytes
.
Supplementary data files not provided
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