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Sample GSM384054 Query DataSets for GSM384054
Status Public on Mar 20, 2009
Title LSAGE_Brain_normal_substantia_nigra_B_1
Sample type SAGE
Anchor NlaIII
Tag Count 41773
Tag Length 17
 
Source name brain, substantia nigra, normal, bulk, long SAGE
Organism Homo sapiens
Characteristics organ/tissue: brain
tissue preparation: bulk
sex: unknown
Biomaterial provider Commercially bought Poly A+ RNA fromClontech, Cat #6580-1, Lot #9040718.
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 648
Tagging_enzyme: Mme I
Library_producer: Deric Olschner
Laboratory: RigginsÆ Lab at Duke University Medical Center
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL1485
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE1902 Cancer Genome Anatomy Project (CGAP) Human LongSAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAAAAAAAAA 120 2872.67
AAAAAAAAAAAAAAAAC 10 239.39
AAAAAAAAAAAAAAAAG 9 215.45
AAAAAAAAAAAAAAAAT 8 191.51
AAAAAAAAAAAAAAACA 1 23.94
AAAAAAAAAAAAAAACC 3 71.82
AAAAAAAAAAAAAAACT 1 23.94
AAAAAAAAAAAAAAAGG 1 23.94
AAAAAAAAAAAAAAATC 3 71.82
AAAAAAAAAAAAAAATT 1 23.94
AAAAAAAAAAAAAACAT 1 23.94
AAAAAAAAAAAAAACCG 1 23.94
AAAAAAAAAAAAAACTC 2 47.88
AAAAAAAAAAAAAAGAA 1 23.94
AAAAAAAAAAAAAAGAG 1 23.94
AAAAAAAAAAAAAAGGC 1 23.94
AAAAAAAAAAAAAAGTT 1 23.94
AAAAAAAAAAAAAATAA 1 23.94
AAAAAAAAAAAAAGAAA 1 23.94
AAAAAAAAAAAAATTGC 1 23.94

Total number of rows: 20528

Table truncated, full table size 522 Kbytes.




Supplementary data files not provided

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