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Sample GSM384063 Query DataSets for GSM384063
Status Public on Mar 20, 2009
Title LSAGE_Breast_carcinoma_epithelium_BerEP4+_AP_IDC8
Sample type SAGE
Anchor NlaIII
Tag Count 66520
Tag Length 17
 
Source name breast, carcinoma, epithelium, antibody purified, long sage, female, adult
Organism Homo sapiens
Characteristics organ/tissue: mammary gland
tissue preparation: antibody purified
sex: female
cell type: Grade II, ER+, PR+, Her2- tumor
other information: BerEP4 purified epithelial cells from invasive breast cancer. Library name in Cancer Cell, 2004, 6(1):17-32 "I-EPI-8 epithelial cells"
Biomaterial provider Andrea Richardson, MD, PhD
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 673
Tagging_enzyme: Mme I
Library_producer: Kornelia Polyak, MD,PhD
Laboratory: Polyak laboratory Dana-Farber Cancer Institute
References: Allinen et al. Cancer Cell. 2004 Jul;6(1):17-32. [PUBMED=15261139]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL1485
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE1902 Cancer Genome Anatomy Project (CGAP) Human LongSAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAAAAAAAAA 23 345.76
AAAAAAAAAAAAAAAAC 2 30.07
AAAAAAAAAAAAAAAAG 10 150.33
AAAAAAAAAAAAAAAAT 3 45.10
AAAAAAAAAAAAAAAGG 1 15.03
AAAAAAAAAAAAAAAGT 1 15.03
AAAAAAAAAAAAAAATT 1 15.03
AAAAAAAAAAAAAACCG 1 15.03
AAAAAAAAAAAAAAGGT 1 15.03
AAAAAAAAAAAAAATAT 1 15.03
AAAAAAAAAAAAGGACA 1 15.03
AAAAAAAAAGAAAAAAA 1 15.03
AAAAAAAAAGAAGTTTT 1 15.03
AAAAAAAAAGTACATTA 1 15.03
AAAAAAAAATAACTAAC 1 15.03
AAAAAAAAGAAAAAAAA 1 15.03
AAAAAAAAGAAGTTTTG 2 30.07
AAAAAAAATGGGCTTTG 1 15.03
AAAAAAAGAAAAAAAAA 3 45.10
AAAAAAAGATGCCCAGA 1 15.03

Total number of rows: 32180

Table truncated, full table size 818 Kbytes.




Supplementary data files not provided
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