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Status |
Public on Mar 20, 2009 |
Title |
LSAGE_Breast_carcinoma_epithelium_CD44+_AP_ASC3 |
Sample type |
SAGE |
Anchor |
NlaIII
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Tag Count |
52478 |
Tag Length |
17 |
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Source name |
human, breast/mammary gland, antibody purified, cancer, ascites, mixed lobular/ductal carcinoma, her2-, recurrence of er+ tumor, female, long sage
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Organism |
Homo sapiens |
Characteristics |
organ/tissue: mammary gland tissue preparation: antibody purified age: unknown sex: female cell type: Ascites, mixed lobular/ductal carcinoma, HER2-, recurrence of ER+ tumor other information: cells purified using CD44 antibody, these cells are CD44+ breast "cancer stem" cells
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Biomaterial provider |
Andrea Richardson, MD,PhD, BWH
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Extracted molecule |
total RNA |
Extraction protocol |
N/A
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Description |
CGAP_Numeric_library_ID: 2169 Tagging_enzyme: Mme I Library_producer: Michail Shipitsin, DFCI Laboratory: Polyak Lab, DFCI References: Shipitsin et al. Cancer Cell 2007 11: 259-273. [PUBMED=17349583]
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Submission date |
Mar 19, 2009 |
Last update date |
Mar 20, 2009 |
Contact name |
Cancer Genome Anatomy Project CGAP |
E-mail(s) |
cgapbs-r@mail.nih.gov
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Phone |
301-496-1550
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URL |
http://cgap.nci.nih.gov/
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Organization name |
National Cancer Institute
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Department |
Cancer Genome Anatomy Project
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Street address |
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City |
Bethesda |
State/province |
MD |
ZIP/Postal code |
20852 |
Country |
USA |
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Platform ID |
GPL1485 |
Series (2) |
GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
GSE1902 |
Cancer Genome Anatomy Project (CGAP) Human LongSAGE |
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Data table header descriptions |
TAG |
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COUNT |
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TPM |
tags per million |
Data table |
TAG |
COUNT |
TPM |
AAAAAAAAAAACATTCT |
1 |
19.06 |
AAAAAAAAGAAGTTTTG |
1 |
19.06 |
AAAAAAAAGGAGGAGGA |
1 |
19.06 |
AAAAAAAAGGCATCAAC |
1 |
19.06 |
AAAAAAAATGAAGTAGG |
1 |
19.06 |
AAAAAAACCCAAACGAA |
1 |
19.06 |
AAAAAAACTATGCTGCT |
1 |
19.06 |
AAAAAAATCAATTGAAA |
1 |
19.06 |
AAAAAAATTTCCAATGA |
1 |
19.06 |
AAAAAACATTTCAGGAG |
1 |
19.06 |
AAAAAACCCAACCCAGA |
1 |
19.06 |
AAAAAACTCCAAATAAG |
3 |
57.17 |
AAAAAACTTGATCGTTG |
1 |
19.06 |
AAAAAAGGGTTGGGGGG |
1 |
19.06 |
AAAAAAGTAACAAAAGC |
1 |
19.06 |
AAAAAATGAATGTCTAG |
1 |
19.06 |
AAAAAATGGTTGATGGA |
1 |
19.06 |
AAAAAATTTGATGTTGT |
3 |
57.17 |
AAAAAATTTTAAAGTGG |
1 |
19.06 |
AAAAACATTACCTGACT |
1 |
19.06 |
Total number of rows: 19859
Table truncated, full table size 506 Kbytes.
Supplementary data files not provided |
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