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Sample GSM384068 Query DataSets for GSM384068
Status Public on Mar 20, 2009
Title LSAGE_Breast_carcinoma_epithelium_CD44+_AP_ASC3
Sample type SAGE
Anchor NlaIII
Tag Count 52478
Tag Length 17
 
Source name human, breast/mammary gland, antibody purified, cancer, ascites, mixed lobular/ductal carcinoma, her2-, recurrence of er+ tumor, female, long sage
Organism Homo sapiens
Characteristics organ/tissue: mammary gland
tissue preparation: antibody purified
age: unknown
sex: female
cell type: Ascites, mixed lobular/ductal carcinoma, HER2-, recurrence of ER+ tumor
other information: cells purified using CD44 antibody, these cells are CD44+ breast "cancer stem" cells
Biomaterial provider Andrea Richardson, MD,PhD, BWH
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 2169
Tagging_enzyme: Mme I
Library_producer: Michail Shipitsin, DFCI
Laboratory: Polyak Lab, DFCI
References: Shipitsin et al. Cancer Cell 2007 11: 259-273. [PUBMED=17349583]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL1485
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE1902 Cancer Genome Anatomy Project (CGAP) Human LongSAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAAACATTCT 1 19.06
AAAAAAAAGAAGTTTTG 1 19.06
AAAAAAAAGGAGGAGGA 1 19.06
AAAAAAAAGGCATCAAC 1 19.06
AAAAAAAATGAAGTAGG 1 19.06
AAAAAAACCCAAACGAA 1 19.06
AAAAAAACTATGCTGCT 1 19.06
AAAAAAATCAATTGAAA 1 19.06
AAAAAAATTTCCAATGA 1 19.06
AAAAAACATTTCAGGAG 1 19.06
AAAAAACCCAACCCAGA 1 19.06
AAAAAACTCCAAATAAG 3 57.17
AAAAAACTTGATCGTTG 1 19.06
AAAAAAGGGTTGGGGGG 1 19.06
AAAAAAGTAACAAAAGC 1 19.06
AAAAAATGAATGTCTAG 1 19.06
AAAAAATGGTTGATGGA 1 19.06
AAAAAATTTGATGTTGT 3 57.17
AAAAAATTTTAAAGTGG 1 19.06
AAAAACATTACCTGACT 1 19.06

Total number of rows: 19859

Table truncated, full table size 506 Kbytes.




Supplementary data files not provided

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