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| Status |
Public on Mar 20, 2009 |
| Title |
LSAGE_Breast_carcinoma_epithelium_X_MUC1+_AP |
| Sample type |
SAGE |
| Anchor |
NlaIII
|
| Tag Count |
75147 |
| Tag Length |
17 |
| |
|
| Source name |
human, breast/mammary gland, antibody purified, cancer, muc1 bead purified cells from mcf10dcis xenografts, female, 8q gain, cdkn1a and lrp1b homozygous deletions, long sage
|
| Organism |
Homo sapiens |
| Characteristics |
organ/tissue: mammary gland
tissue preparation: antibody purified
sex: female
cell type: MUC1 bead purified cells from MCF10DCIS xenografts
mutations: 8q gain, CDKN1A and LRP1B homozygous deletions
|
| Biomaterial provider |
Fred Miller, Karmanos Institute, Detroit, MI
|
| Extracted molecule |
total RNA |
| Extraction protocol |
N/A
|
| |
|
| Description |
CGAP_Numeric_library_ID: 2345
Tagging_enzyme: Mme I
Library_producer: Min Hu, PhD
Laboratory: Polyak Lab, Dana-Farber Cancer Institute, Boston, MA
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| |
|
| Submission date |
Mar 19, 2009 |
| Last update date |
Mar 20, 2009 |
| Contact name |
Cancer Genome Anatomy Project CGAP |
| E-mail(s) |
cgapbs-r@mail.nih.gov
|
| Phone |
301-496-1550
|
| URL |
http://cgap.nci.nih.gov/
|
| Organization name |
National Cancer Institute
|
| Department |
Cancer Genome Anatomy Project
|
| Street address |
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20852 |
| Country |
USA |
| |
|
| Platform ID |
GPL1485 |
| Series (2) |
| GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
| GSE1902 |
Cancer Genome Anatomy Project (CGAP) Human LongSAGE |
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| Data table header descriptions |
| TAG |
|
| COUNT |
|
| TPM |
tags per million |
| Data table |
| TAG |
COUNT |
TPM |
| AAAAAAAAAAAAAAAAA |
17 |
226.22 |
| AAAAAAAAAAAAAAAAC |
1 |
13.31 |
| AAAAAAAAAAAAAAAAG |
1 |
13.31 |
| AAAAAAAAAAAAAAAAT |
1 |
13.31 |
| AAAAAAAAAAAGAAAAA |
1 |
13.31 |
| AAAAAAAAAAAGCAGGA |
1 |
13.31 |
| AAAAAAAAAGAAAAAAA |
1 |
13.31 |
| AAAAAAAAATCTTGCAC |
1 |
13.31 |
| AAAAAAAAATGGGTTCA |
1 |
13.31 |
| AAAAAAAAGGCATCAAC |
1 |
13.31 |
| AAAAAAAATGAAGTAGG |
3 |
39.92 |
| AAAAAAAATGGGTTCAG |
1 |
13.31 |
| AAAAAAACCCAACCCAA |
1 |
13.31 |
| AAAAAAAGAAAAAAAAA |
1 |
13.31 |
| AAAAAAAGAACTCCACT |
2 |
26.61 |
| AAAAAAAGCGTGGGGTG |
1 |
13.31 |
| AAAAAAAGGAGAAAAGG |
2 |
26.61 |
| AAAAAAATCAATTGAAA |
1 |
13.31 |
| AAAAAAATGGAGCTAAC |
1 |
13.31 |
| AAAAAAATTTCCAATGA |
4 |
53.23 |
Total number of rows: 30824
Table truncated, full table size 784 Kbytes.
| Supplementary data files not provided |
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