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Sample GSM384076 Query DataSets for GSM384076
Status Public on Mar 20, 2009
Title LSAGE_Breast_normal_epithelium_CD24+_AP_N15
Sample type SAGE
Anchor NlaIII
Tag Count 41430
Tag Length 17
 
Source name human, breast/mammary gland, antibody purified, normal, normal breast tissue reduction, cd24+ mammary epithelial cells, female, adult, long sage
Organism Homo sapiens
Characteristics organ/tissue: mammary gland
tissue preparation: antibody purified
age: 22
sex: female
cell type: Normal breast tissue reduction
other information: cells purified using CD24 antibody, these cells are CD24+ mammary epithelial cells
Biomaterial provider Andrea Richardson, MD,PhD, BWH
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 2389
Tagging_enzyme: Mme I
Library_producer: Noga Qimron MSc/ MIn Hu PhD, DFCI
Laboratory: Polyak Lab, DFCI
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL1485
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE1902 Cancer Genome Anatomy Project (CGAP) Human LongSAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAAAAAAAAA 4 96.55
AAAAAAAAAAAAAAAGA 2 48.27
AAAAAAAAAAATAGAAA 1 24.14
AAAAAAAAAAGAAAAAA 1 24.14
AAAAAAAAAATAGAAAA 2 48.27
AAAAAAAAATAGAAAAA 5 120.69
AAAAAAAAATAGAAAAG 1 24.14
AAAAAAAAATAGAAAAT 1 24.14
AAAAAAAACTTGTGCTT 1 24.14
AAAAAAAAGAAAAAAAA 1 24.14
AAAAAAAATGAAGTAGG 1 24.14
AAAAAAACAACATTCTG 1 24.14
AAAAAAAGGAGAAAAGA 1 24.14
AAAAAAATTTATGCCAC 2 48.27
AAAAAAATTTCCAATGA 1 24.14
AAAAAACATTTCACGAA 1 24.14
AAAAAACTAGGCAGCAA 1 24.14
AAAAAAGAAGGTCTTTT 1 24.14
AAAAAAGATGGTCCTAA 1 24.14
AAAAAAGATGTCTATGT 1 24.14

Total number of rows: 20293

Table truncated, full table size 516 Kbytes.




Supplementary data files not provided

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