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| Status |
Public on Mar 20, 2009 |
| Title |
LSAGE_Breast_normal_epithelium_MUC1+_AP_N5 |
| Sample type |
SAGE |
| Anchor |
NlaIII
|
| Tag Count |
76227 |
| Tag Length |
17 |
| |
|
| Source name |
human, breast/mammary gland, antibody purified, normal, normal breast tissue reduction, muc1+ mammary epithelial cells, female, adult, long sage
|
| Organism |
Homo sapiens |
| Characteristics |
organ/tissue: mammary gland
tissue preparation: antibody purified
age: 58
sex: female
cell type: Normal breast tissue reduction
other information: cells purified using MUC1 antibody, these cells are MUC1+ mammary epithelial cells
|
| Biomaterial provider |
Andrea Richardson, MD,PhD, BWH
|
| Extracted molecule |
total RNA |
| Extraction protocol |
N/A
|
| |
|
| Description |
CGAP_Numeric_library_ID: 2385
Tagging_enzyme: Mme I
Library_producer: Noga Qimron MSc/ MIn Hu PhD, DFCI
Laboratory: Polyak Lab, DFCI
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| |
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| Submission date |
Mar 19, 2009 |
| Last update date |
Mar 20, 2009 |
| Contact name |
Cancer Genome Anatomy Project CGAP |
| E-mail(s) |
cgapbs-r@mail.nih.gov
|
| Phone |
301-496-1550
|
| URL |
http://cgap.nci.nih.gov/
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| Organization name |
National Cancer Institute
|
| Department |
Cancer Genome Anatomy Project
|
| Street address |
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20852 |
| Country |
USA |
| |
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| Platform ID |
GPL1485 |
| Series (2) |
| GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
| GSE1902 |
Cancer Genome Anatomy Project (CGAP) Human LongSAGE |
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| Data table header descriptions |
| TAG |
|
| COUNT |
|
| TPM |
tags per million |
| Data table |
| TAG |
COUNT |
TPM |
| AAAAAAAAAAAAAAAAA |
7 |
91.83 |
| AAAAAAAAAAAAAAAGA |
1 |
13.12 |
| AAAAAAAAAAAAGAAAA |
1 |
13.12 |
| AAAAAAAAAATAGAAAA |
2 |
26.24 |
| AAAAAAAAATAGAAAAA |
1 |
13.12 |
| AAAAAAAAGAAGTTTTG |
1 |
13.12 |
| AAAAAAAAGGCATCAAC |
1 |
13.12 |
| AAAAAAAATGAAGTAGG |
1 |
13.12 |
| AAAAAAAATTCTCCTCC |
1 |
13.12 |
| AAAAAAATAAAAGACCT |
1 |
13.12 |
| AAAAAAATCAATATTAA |
1 |
13.12 |
| AAAAAAATGATGAAAGT |
1 |
13.12 |
| AAAAAAATGATGGCTAG |
1 |
13.12 |
| AAAAAAATGTTTCCATT |
1 |
13.12 |
| AAAAAAATTTCCAATCA |
2 |
26.24 |
| AAAAAAATTTCCAATGA |
2 |
26.24 |
| AAAAAAATTTCCAATGT |
1 |
13.12 |
| AAAAAACATTTCAGGAG |
1 |
13.12 |
| AAAAAACCACGAAATTT |
1 |
13.12 |
| AAAAAACCCAACCCAGA |
3 |
39.36 |
Total number of rows: 32141
Table truncated, full table size 818 Kbytes.
| Supplementary data files not provided |
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