|
|
GEO help: Mouse over screen elements for information. |
|
Status |
Public on Mar 20, 2009 |
Title |
LSAGE_Breast_normal_myoepithelium_CL_HME50 |
Sample type |
SAGE |
Anchor |
NlaIII
|
Tag Count |
55516 |
Tag Length |
17 |
|
|
Source name |
human, breast/mammary gland, cell line, normal, spontenously immortalized mammary myoepithelial cell line from li-fraumeni patient, female, li-fraumeni patient (heterozygous tp53 mutation), long sage
|
Organism |
Homo sapiens |
Characteristics |
organ/tissue: mammary gland tissue preparation: cell line sex: female cell type: spontenously immortalized mammary myoepithelial cell line from Li-Fraumeni patient mutations: Li-Fraumeni patient (heterozygous TP53 mutation)
|
Biomaterial provider |
Jerry Shay, UT Southwestern, Dallas, TX
|
Extracted molecule |
total RNA |
Extraction protocol |
N/A
|
|
|
Description |
CGAP_Numeric_library_ID: 2347 Tagging_enzyme: Mme I Library_producer: Min Hu, PhD Laboratory: Polyak Lab, Dana-Farber Cancer Institute, Boston, MA
|
|
|
Submission date |
Mar 19, 2009 |
Last update date |
Mar 20, 2009 |
Contact name |
Cancer Genome Anatomy Project CGAP |
E-mail(s) |
cgapbs-r@mail.nih.gov
|
Phone |
301-496-1550
|
URL |
http://cgap.nci.nih.gov/
|
Organization name |
National Cancer Institute
|
Department |
Cancer Genome Anatomy Project
|
Street address |
|
City |
Bethesda |
State/province |
MD |
ZIP/Postal code |
20852 |
Country |
USA |
|
|
Platform ID |
GPL1485 |
Series (2) |
GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
GSE1902 |
Cancer Genome Anatomy Project (CGAP) Human LongSAGE |
|
Data table header descriptions |
TAG |
|
COUNT |
|
TPM |
tags per million |
Data table |
TAG |
COUNT |
TPM |
AAAAAAAAAAAAAAAAA |
126 |
2269.62 |
AAAAAAAAAAAAAAAAC |
3 |
54.04 |
AAAAAAAAAAAAAAAAG |
10 |
180.13 |
AAAAAAAAAAAAAAAAT |
9 |
162.12 |
AAAAAAAAAAAAAAACC |
1 |
18.01 |
AAAAAAAAAAAAAAAGA |
3 |
54.04 |
AAAAAAAAAAAAAAAGC |
1 |
18.01 |
AAAAAAAAAAAAAAAGT |
1 |
18.01 |
AAAAAAAAAAAAAAATA |
1 |
18.01 |
AAAAAAAAAAAAAAATC |
1 |
18.01 |
AAAAAAAAAAAAAAATT |
1 |
18.01 |
AAAAAAAAAAAAAACAC |
1 |
18.01 |
AAAAAAAAAAAAAAGAA |
1 |
18.01 |
AAAAAAAAAAAAAGAAA |
1 |
18.01 |
AAAAAAAAAAAGAAAAA |
2 |
36.03 |
AAAAAAAAAAGAAAAAA |
1 |
18.01 |
AAAAAAAAAGAAAAAAA |
1 |
18.01 |
AAAAAAAAAGAAAAAAG |
1 |
18.01 |
AAAAAAAAAGTAAAACT |
1 |
18.01 |
AAAAAAAAATGAAGTTG |
1 |
18.01 |
Total number of rows: 22910
Table truncated, full table size 583 Kbytes.
Supplementary data files not provided |
|
|
|
|
|