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Sample GSM384091 Query DataSets for GSM384091
Status Public on Mar 20, 2009
Title LSAGE_Colon_carcinoma_CL_Hct116_wildtype_p53_Anoxia
Sample type SAGE
Anchor NlaIII
Tag Count 79015
Tag Length 17
 
Source name colon, carcinoma, cell line, long sage
Organism Homo sapiens
Characteristics organ/tissue: colon
tissue preparation: cell line
sex: unknown
cell type: cell line derived from colorectal carcinoma
Biomaterial provider BERT VOGELSTEIN
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 651
Tagging_enzyme: Mme I
Library_producer: ANITA LAL
Laboratory: RIGGINS LABORATORY AT DUKE UNIVERSITY MEDICAL CENTER
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL1485
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE1902 Cancer Genome Anatomy Project (CGAP) Human LongSAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAAAAAAACA 1 12.66
AAAAAAAAGAAGCTTTG 1 12.66
AAAAAAACCTGGTGGTC 1 12.66
AAAAAACATTTCAGGAG 3 37.97
AAAAAACCCAACCCAAA 1 12.66
AAAAAACTCCAAATAAG 1 12.66
AAAAAAGAGGCATCAAC 1 12.66
AAAAAAGCAAGATGACT 1 12.66
AAAAAAGCAGATGACTT 1 12.66
AAAAAAGTCCCGGTTAA 1 12.66
AAAAAATGAAAAGTAGA 1 12.66
AAAAAATGGATGATGGC 1 12.66
AAAAAATGGCTGATGGA 1 12.66
AAAAAATGGTGATGGAG 1 12.66
AAAAAATGGTTAATGGA 1 12.66
AAAAAATGGTTGATGGA 6 75.93
AAAAAATGTTTGATGGA 1 12.66
AAAAACATTCTCCTTCC 1 12.66
AAAAACGCTGTTGTTGA 1 12.66
AAAAACGGTTGATGGAC 1 12.66

Total number of rows: 27498

Table truncated, full table size 700 Kbytes.




Supplementary data files not provided

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