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Sample GSM384100 Query DataSets for GSM384100
Status Public on Mar 20, 2009
Title LSAGE_Embryonic_stem_cell_H9_normal_p38_CL_SHES2
Sample type SAGE
Anchor NlaIII
Tag Count 401432
Tag Length 17
 
Source name embryonic stem cell, normal, cell line, h9, wa09, female, long sage, mef
Organism Homo sapiens
Characteristics organ/tissue: stem cell
tissue preparation: cell line
age: passage 38
sex: female
Biomaterial provider Jamie Thomson
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 843
Tagging_enzyme: Mme I
Library_producer: Jas Khattra, Gene Expression Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL1485
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE1902 Cancer Genome Anatomy Project (CGAP) Human LongSAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAAAAAAAAA 450 1120.99
AAAAAAAAAAAAAAAAC 21 52.31
AAAAAAAAAAAAAAAAG 29 72.24
AAAAAAAAAAAAAAAAT 10 24.91
AAAAAAAAAAAAAAACA 1 2.49
AAAAAAAAAAAAAACAA 1 2.49
AAAAAAAAAAAAAAGAA 3 7.47
AAAAAAAAAAAACAAAA 1 2.49
AAAAAAAAAAAAGAAAA 2 4.98
AAAAAAAAAAACAAAAG 1 2.49
AAAAAAAAAAAGAAAAA 2 4.98
AAAAAAAAAAATCCTGC 1 2.49
AAAAAAAAAACCAAAAA 1 2.49
AAAAAAAAAAGAAAAAA 1 2.49
AAAAAAAAAAGAAATAA 1 2.49
AAAAAAAAAATGTAAAT 1 2.49
AAAAAAAAACCTTTGAA 1 2.49
AAAAAAAAACTTTGTGG 1 2.49
AAAAAAAAAGAAAAAAA 2 4.98
AAAAAAAAATAAAAAAA 1 2.49

Total number of rows: 104438

Table truncated, full table size 2568 Kbytes.




Supplementary data files not provided

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