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Status
Public on Mar 20, 2009
Title
LSAGE_Embryonic_stem_cell_HES4_normal_p36_CL_SHE11
Sample type
SAGE
Anchor
NlaIII
Tag Count
209232
Tag Length
17
Source name
embryonic stem cell, normal, cell line, long sage, male, hes4, es04, mef
Organism
Homo sapiens
Characteristics
organ/tissue: stem cell tissue preparation: cell line age: p36 sex: male
Biomaterial provider
Martin Pera
Extracted molecule
total RNA
Extraction protocol
N/A
Description
CGAP_Numeric_library_ID: 1383 Tagging_enzyme: Mme I Library_producer: Jas Khattra, Gene Expression Lab Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC
Submission date
Mar 19, 2009
Last update date
Mar 20, 2009
Contact name
Cancer Genome Anatomy Project CGAP
E-mail(s)
cgapbs-r@mail.nih.gov
Phone
301-496-1550
URL
http://cgap.nci.nih.gov/
Organization name
National Cancer Institute
Department
Cancer Genome Anatomy Project
Street address
City
Bethesda
State/province
MD
ZIP/Postal code
20852
Country
USA
Platform ID
GPL1485
Series (2)
GSE14
Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE1902
Cancer Genome Anatomy Project (CGAP) Human LongSAGE
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAAAAAAAAA
100
477.94
AAAAAAAAAAAAAAAAC
3
14.34
AAAAAAAAAAAAAAAAG
7
33.46
AAAAAAAAAAAAAAATT
1
4.78
AAAAAAAAAAAAAACAA
1
4.78
AAAAAAAAAAAAAATTA
1
4.78
AAAAAAAAAAAAAGAAA
1
4.78
AAAAAAAAAAAAGAAAA
1
4.78
AAAAAAAAAAACCAAAG
1
4.78
AAAAAAAAAAAGGGGAA
1
4.78
AAAAAAAAAAATAAAAA
1
4.78
AAAAAAAAAGAAAAAAC
1
4.78
AAAAAAAAAGTTTATCT
1
4.78
AAAAAAAAATCTTGCAA
1
4.78
AAAAAAAAATCTTGCAC
6
28.68
AAAAAAAACACAAGAGG
1
4.78
AAAAAAAACCCTCTTCT
1
4.78
AAAAAAAACTGTGGCTC
1
4.78
AAAAAAAACTTACTCTT
1
4.78
AAAAAAAACTTGTGCCT
1
4.78
Total number of rows: 59212 Table truncated, full table size 1459 Kbytes .Supplementary data files not provided