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Sample GSM384102 Query DataSets for GSM384102
Status Public on Mar 20, 2009
Title LSAGE_Embryonic_stem_cell_HES4_normal_p36_CL_SHE11
Sample type SAGE
Anchor NlaIII
Tag Count 209232
Tag Length 17
 
Source name embryonic stem cell, normal, cell line, long sage, male, hes4, es04, mef
Organism Homo sapiens
Characteristics organ/tissue: stem cell
tissue preparation: cell line
age: p36
sex: male
Biomaterial provider Martin Pera
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 1383
Tagging_enzyme: Mme I
Library_producer: Jas Khattra, Gene Expression Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL1485
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE1902 Cancer Genome Anatomy Project (CGAP) Human LongSAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAAAAAAAAA 100 477.94
AAAAAAAAAAAAAAAAC 3 14.34
AAAAAAAAAAAAAAAAG 7 33.46
AAAAAAAAAAAAAAATT 1 4.78
AAAAAAAAAAAAAACAA 1 4.78
AAAAAAAAAAAAAATTA 1 4.78
AAAAAAAAAAAAAGAAA 1 4.78
AAAAAAAAAAAAGAAAA 1 4.78
AAAAAAAAAAACCAAAG 1 4.78
AAAAAAAAAAAGGGGAA 1 4.78
AAAAAAAAAAATAAAAA 1 4.78
AAAAAAAAAGAAAAAAC 1 4.78
AAAAAAAAAGTTTATCT 1 4.78
AAAAAAAAATCTTGCAA 1 4.78
AAAAAAAAATCTTGCAC 6 28.68
AAAAAAAACACAAGAGG 1 4.78
AAAAAAAACCCTCTTCT 1 4.78
AAAAAAAACTGTGGCTC 1 4.78
AAAAAAAACTTACTCTT 1 4.78
AAAAAAAACTTGTGCCT 1 4.78

Total number of rows: 59212

Table truncated, full table size 1459 Kbytes.




Supplementary data files not provided

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