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Sample GSM384110 Query DataSets for GSM384110
Status Public on Mar 20, 2009
Title LSAGE_Foreskin_normal_B_hs0305
Sample type SAGE
Anchor NlaIII
Tag Count 3940350
Tag Length 17
 
Source name skin, normal, bulk, long sage, slx-sage, solexa sage, male, foreskin, baby
Organism Homo sapiens
Characteristics organ/tissue: skin
tissue preparation: bulk
age: 9 months old baby
sex: male
cell type: foreskin
other information: SLX-SAGE
Biomaterial provider Laurence Baskin, University of California, San Francisco
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 2285
Tagging_enzyme: Mme I
Library_producer: Martin Hirst, Functional Genomics Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, Canada
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL1485
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15314 Cancer Genome Anatomy Project (CGAP) Human Solexa LongSAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAAAAAAAAA 4750 1205.48
AAAAAAAAAAAAAAAAC 248 62.94
AAAAAAAAAAAAAAAAG 149 37.81
AAAAAAAAAAAAAAAAT 378 95.93
AAAAAAAAAAAAAAACA 32 8.12
AAAAAAAAAAAAAAACC 16 4.06
AAAAAAAAAAAAAAACT 7 1.78
AAAAAAAAAAAAAAAGA 49 12.44
AAAAAAAAAAAAAAAGC 19 4.82
AAAAAAAAAAAAAAAGG 25 6.34
AAAAAAAAAAAAAAAGT 12 3.05
AAAAAAAAAAAAAAATA 44 11.17
AAAAAAAAAAAAAAATC 47 11.93
AAAAAAAAAAAAAAATG 18 4.57
AAAAAAAAAAAAAAATT 12 3.05
AAAAAAAAAAAAAACAA 22 5.58
AAAAAAAAAAAAAACAC 4 1.02
AAAAAAAAAAAAAACAG 2 0.51
AAAAAAAAAAAAAACAT 4 1.02
AAAAAAAAAAAAAACTA 2 0.51

Total number of rows: 267732

Table truncated, full table size 6575 Kbytes.




Supplementary data files not provided

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