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Sample GSM384117 Query DataSets for GSM384117
Status Public on Mar 20, 2009
Title LSAGE_Lymph_Node_Lymphoma_B_1
Sample type SAGE
Anchor NlaIII
Tag Count 72008
Tag Length 17
 
Source name lymph node, b cell lymphoma, non-normalized, long sage, bulk
Organism Homo sapiens
Characteristics organ/tissue: lymph node
tissue preparation: bulk
age: 52
sex: male
cell type: Large B cell Lymphoma, Malignant, high grade, involving the serosa of the appendix
Biomaterial provider Ambion
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 1864
Tagging_enzyme: Mme I
Library_producer: Jennifer B. Edwards
Laboratory: Dr. Gregory Riggins
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL1485
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE1902 Cancer Genome Anatomy Project (CGAP) Human LongSAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAAAAAAAAA 10 138.87
AAAAAAAAAAAAAAAAT 1 13.89
AAAAAAAAAAAAAGTCA 1 13.89
AAAAAAAAAAAAATCTA 1 13.89
AAAAAAAAAAAATAAAA 1 13.89
AAAAAAAAAAAGAAAAA 1 13.89
AAAAAAAAAGCCTCAAC 1 13.89
AAAAAAAAGAAGTTTTG 4 55.55
AAAAAAAAGAGGTTTTG 1 13.89
AAAAAAAAGCCCCCCCC 1 13.89
AAAAAAAAGGCATCAAC 1 13.89
AAAAAAAATATTATTCA 1 13.89
AAAAAAAATCTTGCACT 1 13.89
AAAAAAAATGAAGTAGG 4 55.55
AAAAAAAGAAGTTTTGG 1 13.89
AAAAAAAGAGCCATAGT 1 13.89
AAAAAAAGGCATATGGA 1 13.89
AAAAAAAGGTGTTTATT 1 13.89
AAAAAAAGTTAATGGCT 1 13.89
AAAAAAAGTTGTGTTGA 1 13.89

Total number of rows: 25903

Table truncated, full table size 659 Kbytes.




Supplementary data files not provided

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