NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM384132 Query DataSets for GSM384132
Status Public on Mar 20, 2009
Title LSAGE_Skin_Melanoma_B_hs0274
Sample type SAGE
Anchor NlaIII
Tag Count 3895211
Tag Length 17
 
Source name skin, cancer, bulk, long sage, slx-sage, solexa sage, male, melanoma
Organism Homo sapiens
Characteristics organ/tissue: skin
tissue preparation: bulk
sex: male
cell type: stage2 primary melanoma non-pigmented
other information: SLX-SAGE
Biomaterial provider Youwen Zhou, University of British Columbia
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 2269
Tagging_enzyme: Mme I
Library_producer: Martin Hirst, Functional Genomics Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, Canada
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL1485
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15314 Cancer Genome Anatomy Project (CGAP) Human Solexa LongSAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAAAAAAAAA 19336 4964.04
AAAAAAAAAAAAAAAAC 1465 376.10
AAAAAAAAAAAAAAAAG 294 75.48
AAAAAAAAAAAAAAAAT 2410 618.71
AAAAAAAAAAAAAAACA 206 52.89
AAAAAAAAAAAAAAACC 134 34.40
AAAAAAAAAAAAAAACT 74 19.00
AAAAAAAAAAAAAAAGA 91 23.36
AAAAAAAAAAAAAAAGC 85 21.82
AAAAAAAAAAAAAAAGG 25 6.42
AAAAAAAAAAAAAAAGT 35 8.99
AAAAAAAAAAAAAAATA 174 44.67
AAAAAAAAAAAAAAATC 332 85.23
AAAAAAAAAAAAAAATG 50 12.84
AAAAAAAAAAAAAAATT 117 30.04
AAAAAAAAAAAAAACAA 146 37.48
AAAAAAAAAAAAAACAC 56 14.38
AAAAAAAAAAAAAACAG 11 2.82
AAAAAAAAAAAAAACAT 37 9.50
AAAAAAAAAAAAAACCA 13 3.34

Total number of rows: 218328

Table truncated, full table size 5373 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap