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Status
Public on Mar 20, 2009
Title
LSAGE_Skin_Melanoma_B_hs0274
Sample type
SAGE
Anchor
NlaIII
Tag Count
3895211
Tag Length
17
Source name
skin, cancer, bulk, long sage, slx-sage, solexa sage, male, melanoma
Organism
Homo sapiens
Characteristics
organ/tissue: skin tissue preparation: bulk sex: male cell type: stage2 primary melanoma non-pigmented other information: SLX-SAGE
Biomaterial provider
Youwen Zhou, University of British Columbia
Extracted molecule
total RNA
Extraction protocol
N/A
Description
CGAP_Numeric_library_ID: 2269 Tagging_enzyme: Mme I Library_producer: Martin Hirst, Functional Genomics Lab Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, Canada
Submission date
Mar 19, 2009
Last update date
Mar 20, 2009
Contact name
Cancer Genome Anatomy Project CGAP
E-mail(s)
cgapbs-r@mail.nih.gov
Phone
301-496-1550
URL
http://cgap.nci.nih.gov/
Organization name
National Cancer Institute
Department
Cancer Genome Anatomy Project
Street address
City
Bethesda
State/province
MD
ZIP/Postal code
20852
Country
USA
Platform ID
GPL1485
Series (2)
GSE14
Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15314
Cancer Genome Anatomy Project (CGAP) Human Solexa LongSAGE
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAAAAAAAAA
19336
4964.04
AAAAAAAAAAAAAAAAC
1465
376.10
AAAAAAAAAAAAAAAAG
294
75.48
AAAAAAAAAAAAAAAAT
2410
618.71
AAAAAAAAAAAAAAACA
206
52.89
AAAAAAAAAAAAAAACC
134
34.40
AAAAAAAAAAAAAAACT
74
19.00
AAAAAAAAAAAAAAAGA
91
23.36
AAAAAAAAAAAAAAAGC
85
21.82
AAAAAAAAAAAAAAAGG
25
6.42
AAAAAAAAAAAAAAAGT
35
8.99
AAAAAAAAAAAAAAATA
174
44.67
AAAAAAAAAAAAAAATC
332
85.23
AAAAAAAAAAAAAAATG
50
12.84
AAAAAAAAAAAAAAATT
117
30.04
AAAAAAAAAAAAAACAA
146
37.48
AAAAAAAAAAAAAACAC
56
14.38
AAAAAAAAAAAAAACAG
11
2.82
AAAAAAAAAAAAAACAT
37
9.50
AAAAAAAAAAAAAACCA
13
3.34
Total number of rows: 218328 Table truncated, full table size 5373 Kbytes .Supplementary data files not provided