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Status
Public on Mar 20, 2009
Title
LSAGE_Skin_Normal_B_hs0272
Sample type
SAGE
Anchor
NlaIII
Tag Count
4397550
Tag Length
17
Source name
skin, normal, bulk, long sage, slx-sage, solexa sage, female
Organism
Homo sapiens
Characteristics
organ/tissue: skin tissue preparation: bulk sex: female other information: SLX-SAGE
Biomaterial provider
Youwen Zhou, University of British Columbia
Extracted molecule
total RNA
Extraction protocol
N/A
Description
CGAP_Numeric_library_ID: 2265 Tagging_enzyme: Mme I Library_producer: Martin Hirst, Functional Genomics Lab Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, Canada
Submission date
Mar 19, 2009
Last update date
Mar 20, 2009
Contact name
Cancer Genome Anatomy Project CGAP
E-mail(s)
cgapbs-r@mail.nih.gov
Phone
301-496-1550
URL
http://cgap.nci.nih.gov/
Organization name
National Cancer Institute
Department
Cancer Genome Anatomy Project
Street address
City
Bethesda
State/province
MD
ZIP/Postal code
20852
Country
USA
Platform ID
GPL1485
Series (2)
GSE14
Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15314
Cancer Genome Anatomy Project (CGAP) Human Solexa LongSAGE
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAAAAAAAAA
31212
7097.59
AAAAAAAAAAAAAAAAC
1953
444.11
AAAAAAAAAAAAAAAAG
423
96.19
AAAAAAAAAAAAAAAAT
3362
764.52
AAAAAAAAAAAAAAACA
200
45.48
AAAAAAAAAAAAAAACC
147
33.43
AAAAAAAAAAAAAAACT
87
19.78
AAAAAAAAAAAAAAAGA
109
24.79
AAAAAAAAAAAAAAAGC
48
10.92
AAAAAAAAAAAAAAAGG
30
6.82
AAAAAAAAAAAAAAAGT
37
8.41
AAAAAAAAAAAAAAATA
404
91.87
AAAAAAAAAAAAAAATC
375
85.27
AAAAAAAAAAAAAAATG
79
17.96
AAAAAAAAAAAAAAATT
223
50.71
AAAAAAAAAAAAAACAA
163
37.07
AAAAAAAAAAAAAACAC
33
7.50
AAAAAAAAAAAAAACAG
12
2.73
AAAAAAAAAAAAAACAT
32
7.28
AAAAAAAAAAAAAACCA
11
2.50
Total number of rows: 256860 Table truncated, full table size 6317 Kbytes .Supplementary data files not provided