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Sample GSM384136 Query DataSets for GSM384136
Status Public on Mar 20, 2009
Title LSAGE_Skin_Normal_B_hs0272
Sample type SAGE
Anchor NlaIII
Tag Count 4397550
Tag Length 17
 
Source name skin, normal, bulk, long sage, slx-sage, solexa sage, female
Organism Homo sapiens
Characteristics organ/tissue: skin
tissue preparation: bulk
sex: female
other information: SLX-SAGE
Biomaterial provider Youwen Zhou, University of British Columbia
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 2265
Tagging_enzyme: Mme I
Library_producer: Martin Hirst, Functional Genomics Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, Canada
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL1485
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15314 Cancer Genome Anatomy Project (CGAP) Human Solexa LongSAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAAAAAAAAA 31212 7097.59
AAAAAAAAAAAAAAAAC 1953 444.11
AAAAAAAAAAAAAAAAG 423 96.19
AAAAAAAAAAAAAAAAT 3362 764.52
AAAAAAAAAAAAAAACA 200 45.48
AAAAAAAAAAAAAAACC 147 33.43
AAAAAAAAAAAAAAACT 87 19.78
AAAAAAAAAAAAAAAGA 109 24.79
AAAAAAAAAAAAAAAGC 48 10.92
AAAAAAAAAAAAAAAGG 30 6.82
AAAAAAAAAAAAAAAGT 37 8.41
AAAAAAAAAAAAAAATA 404 91.87
AAAAAAAAAAAAAAATC 375 85.27
AAAAAAAAAAAAAAATG 79 17.96
AAAAAAAAAAAAAAATT 223 50.71
AAAAAAAAAAAAAACAA 163 37.07
AAAAAAAAAAAAAACAC 33 7.50
AAAAAAAAAAAAAACAG 12 2.73
AAAAAAAAAAAAAACAT 32 7.28
AAAAAAAAAAAAAACCA 11 2.50

Total number of rows: 256860

Table truncated, full table size 6317 Kbytes.




Supplementary data files not provided

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