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Sample GSM384139 Query DataSets for GSM384139
Status Public on Mar 20, 2009
Title LSAGE_Skin_Normal_B_hs0281
Sample type SAGE
Anchor NlaIII
Tag Count 6517089
Tag Length 17
 
Source name skin, normal, bulk, benign hyperplasia, long sage, slx-sage, solexa sage, male, seborrheic keratosis
Organism Homo sapiens
Characteristics organ/tissue: skin
tissue preparation: bulk
sex: male
cell type: Seborrheic Keratosis
other information: SLX-SAGE
Biomaterial provider Youwen Zhou Lab, University of British Columbia
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 2325
Tagging_enzyme: Mme I
Library_producer: Martin Hirst, Functional Genomics Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, Canada
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL1485
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15314 Cancer Genome Anatomy Project (CGAP) Human Solexa LongSAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAAAAAAAAA 4429 679.60
AAAAAAAAAAAAAAAAC 207 31.76
AAAAAAAAAAAAAAAAG 55 8.44
AAAAAAAAAAAAAAAAT 333 51.10
AAAAAAAAAAAAAAACA 13 1.99
AAAAAAAAAAAAAAACC 15 2.30
AAAAAAAAAAAAAAACT 9 1.38
AAAAAAAAAAAAAAAGA 13 1.99
AAAAAAAAAAAAAAAGC 17 2.61
AAAAAAAAAAAAAAAGG 2 0.31
AAAAAAAAAAAAAAAGT 5 0.77
AAAAAAAAAAAAAAATA 20 3.07
AAAAAAAAAAAAAAATC 40 6.14
AAAAAAAAAAAAAAATG 12 1.84
AAAAAAAAAAAAAAATT 19 2.92
AAAAAAAAAAAAAACAA 15 2.30
AAAAAAAAAAAAAACAC 4 0.61
AAAAAAAAAAAAAAGAA 12 1.84
AAAAAAAAAAAAAAGAC 2 0.31
AAAAAAAAAAAAAAGAT 2 0.31

Total number of rows: 189594

Table truncated, full table size 4678 Kbytes.




Supplementary data files not provided

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