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Sample GSM384167

Query DataSets for GSM384167

Status

Public on Mar 20, 2009

Title

mSAGE_Bone_marrow_normal_GM-CSF_IL10_LPS_FS

Sample type

SAGE

Anchor

NlaIII

Tag Count

31037

Tag Length

Source name

bone marrow, flow-sorted, normal, gm-csf, differentiated, dendritic cell, lps, short sage

Organism

Mus musculus

Characteristics

organ/tissue: bone marrow
tissue preparation: flow-sorted
sex: unknown
other information: CBA/Ca mouse bone marrow was cultured with GM-CSF for 9 days to generate dendritic cells. Recombinant mouse IL-10(20ng/ml) was added from day 6 and bacterial derived LPS also added for the last 20 hrs of culture. [SAGEMap name: bmDC (IL-10+LPS)]

Extracted molecule

total RNA

Extraction protocol

N/A

Description

Tagging_enzyme: BsmF I
CGAP_Numeric_library_ID: 1072
Laboratory: Kathleen Nolan, Paul Fairchild , Vicki Strong, Sian Cartland, Steve Cobbold Waldmann

Submission date

Mar 19, 2009

Last update date

Mar 20, 2009

Contact name

Cancer Genome Anatomy Project CGAP

E-mail(s)

cgapbs-r@mail.nih.gov

Phone

301-496-1550

URL

http://cgap.nci.nih.gov/

Organization name

National Cancer Institute

Department

Cancer Genome Anatomy Project

Street address

City

Bethesda

State/province

ZIP/Postal code

20852

Country

USA

Platform ID

GPL11

Series (2)

GSE14	Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15311	Cancer Genome Anatomy Project (CGAP) Mouse SAGE

Data table header descriptions
TAG
COUNT
TPM	tags per million

Data table
TAG	COUNT	TPM
AAAAAAAAAT	1	32.22
AAAAAAATAG	1	32.22
AAAAAACACC	2	64.44
AAAAAACCAA	1	32.22
AAAAAATAAA	1	32.22
AAAAACACCC	3	96.66
AAAAACCACC	9	289.98
AAAAACTCAC	1	32.22
AAAAAGAAGC	1	32.22
AAAAAGACAA	1	32.22
AAAAAGCGAA	2	64.44
AAAAAGCTCC	1	32.22
AAAAAGGTGG	1	32.22
AAAAATCATC	9	289.98
AAAAATGTAC	1	32.22
AAAAATGTGG	3	96.66
AAAACAACTC	1	32.22
AAAACAAGCC	18	579.95
AAAACAAGTA	1	32.22
AAAACAAGTC	13	418.85

Total number of rows: 10074

Table truncated, full table size 188 Kbytes.

Supplementary data files not provided