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Sample GSM384168 Query DataSets for GSM384168
Status Public on Mar 20, 2009
Title mSAGE_Bone_marrow_normal_GM-CSF_VitD3_FS
Sample type SAGE
Anchor NlaIII
Tag Count 20398
Tag Length 10
 
Source name bone marrow, normal, flow-sorted, differentiated, dendritic cell, gm-csf, vitd3, short sage
Organism Mus musculus
Characteristics organ/tissue: bone marrow
tissue preparation: flow-sorted
sex: unknown
other information: CBA/Ca mouse bone marrow cells were culture with GM-CSF for 7 days in the presence of 1 alpha 25 dihydroxyvitamin D3 (10^-7M) from day 3. [SAGEMap name: bmDC (Vitamin D3 treated)]
Extracted molecule total RNA
Extraction protocol N/A
 
Description Tagging_enzyme: BsmF I
CGAP_Numeric_library_ID: 1065
Laboratory: Stephen Yates, Kathleen Nolan, Paul Fairchild, Steve Cobbold, Herman Waldmann
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL11
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15311 Cancer Genome Anatomy Project (CGAP) Mouse SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAT 1 49.02
AAAAAACTAC 1 49.02
AAAAAACTGT 1 49.02
AAAAAATAAA 1 49.02
AAAAACCACC 3 147.07
AAAAAGAAGC 1 49.02
AAAAAGCGAA 1 49.02
AAAAAGTACC 4 196.10
AAAAAGTCAA 2 98.05
AAAAATCACT 1 49.02
AAAAATCATC 4 196.10
AAAAATGTGG 1 49.02
AAAACAAGAC 1 49.02
AAAACAAGCC 1 49.02
AAAACAAGTA 1 49.02
AAAACAAGTC 1 49.02
AAAACAGTGG 22 1078.54
AAAACCAAAA 1 49.02
AAAACCATTG 1 49.02
AAAACCGTGG 1 49.02

Total number of rows: 7494

Table truncated, full table size 140 Kbytes.




Supplementary data files not provided
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