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Sample GSM384171 Query DataSets for GSM384171
Status Public on Mar 20, 2009
Title mSAGE_Brain_medulloblastoma_B_3871
Sample type SAGE
Anchor NlaIII
Tag Count 43127
Tag Length 10
 
Source name medulloblastoma, cerebellum, bulk, short sage, unknown development stage
Organism Mus musculus
Characteristics organ/tissue: cerebellum
tissue preparation: bulk
sex: unknown
cell type: medulloblastoma tumor from a patch +/- heterozygous KO mouse.
mutations: germline patch KO mouse
Biomaterial provider Matt Scott and Rob Wechler-Reya at Stanford University
Extracted molecule total RNA
Extraction protocol N/A
 
Description Tagging_enzyme: BsmF I
CGAP_Numeric_library_ID: 904
Library_producer: Christopher Turner, MD
Laboratory: Gregory Riggins, MD, PhD
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL11
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15311 Cancer Genome Anatomy Project (CGAP) Mouse SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 345 7999.63
AAAAAAAAAC 2 46.37
AAAAAAAAAG 6 139.12
AAAAAAAAAT 2 46.37
AAAAAAAACA 1 23.19
AAAAAAAAGA 3 69.56
AAAAAAAATA 2 46.37
AAAAAAAATG 1 23.19
AAAAAAACTG 1 23.19
AAAAAAAGAA 1 23.19
AAAAAAATAA 6 139.12
AAAAAAATAG 9 208.69
AAAAAAATAT 1 23.19
AAAAAAATTA 1 23.19
AAAAAACTCA 1 23.19
AAAAAAGAAA 3 69.56
AAAAAATAAA 3 69.56
AAAAAATTAA 1 23.19
AAAAACAAAA 16 371.00
AAAAACAAGT 1 23.19

Total number of rows: 17675

Table truncated, full table size 329 Kbytes.




Supplementary data files not provided

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