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Sample GSM384220 Query DataSets for GSM384220
Status Public on Mar 20, 2009
Title mSAGE_Brain_normal_TS20_LCM_SM064
Sample type SAGE
Anchor NlaIII
Tag Count 147837
Tag Length 10
 
Source name brain, prestriatum, normal, laser capture microdissected, extracted short sage, mid-gestation embryo, ts20, atlas, sagelite
Organism Mus musculus
Characteristics organ/tissue: brain
tissue preparation: laser capture microdissected
age: TS20
sex: unknown
cell type: prestriatum
Biomaterial provider Elizabeth Simpson Lab
Extracted molecule total RNA
Extraction protocol N/A
 
Description Tagging_enzyme: Mme I
CGAP_Numeric_library_ID: 1244
Library_producer: Jas Khattra, Gene Expression Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL11
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15311 Cancer Genome Anatomy Project (CGAP) Mouse SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 328 2218.66
AAAAAAAAAC 1 6.76
AAAAAAAAAG 2 13.53
AAAAAAAAAT 1 6.76
AAAAAAAACA 1 6.76
AAAAAAAAGA 3 20.29
AAAAAAAATA 1 6.76
AAAAAAAATG 3 20.29
AAAAAAACAT 1 6.76
AAAAAAACCA 1 6.76
AAAAAAACTA 4 27.06
AAAAAAACTT 2 13.53
AAAAAAAGAA 1 6.76
AAAAAAATAA 7 47.35
AAAAAAATAG 1 6.76
AAAAAAATGT 2 13.53
AAAAAAATTG 1 6.76
AAAAAACAAA 3 20.29
AAAAAACCAA 1 6.76
AAAAAACTCA 1 6.76

Total number of rows: 28799

Table truncated, full table size 519 Kbytes.




Supplementary data files not provided

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