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Sample GSM384283 Query DataSets for GSM384283
Status Public on Mar 20, 2009
Title mSAGE_Hippocampus_normal_B_LAL
Sample type SAGE
Anchor NlaIII
Tag Count 30931
Tag Length 10
 
Source name hippocampus, normal, bulk, short sage, long attack latency, adult
Organism Mus musculus
Characteristics organ/tissue: brain
tissue preparation: bulk
sex: unknown
other information: Two wild house mice lines were genetically selected for short and long attack latency. Mice with an attack latency >600s were considered long attack latency mice (LAL). RNA from the hippocampus of 14 LAL mice was pooled and used as input material for a SAGE library. (NCBI name: mouse hippocampus: long attack latency (LAL) mice)
Extracted molecule total RNA
Extraction protocol N/A
 
Description Tagging_enzyme: BsmF I
CGAP_Numeric_library_ID: 1085
Laboratory: Dorine Feldker, Nicole Datson, Alexa Veenema, Erik Meulmeester, E. Ronald de Kloet, Erno Vreugdenhil
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL11
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15311 Cancer Genome Anatomy Project (CGAP) Mouse SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 115 3717.95
AAAAAAAAGA 2 64.66
AAAAAAACAA 1 32.33
AAAAAAAGCA 1 32.33
AAAAAAATAA 3 96.99
AAAAAAATAG 1 32.33
AAAAAACATT 1 32.33
AAAAAAGACA 1 32.33
AAAAAAGCAA 1 32.33
AAAAAAGGTG 1 32.33
AAAAAATAAA 2 64.66
AAAAAATTGA 5 161.65
AAAAACAAAA 2 64.66
AAAAACAAGT 1 32.33
AAAAACAATC 2 64.66
AAAAACACAC 1 32.33
AAAAACAGGT 1 32.33
AAAAACATCT 1 32.33
AAAAACCAAA 1 32.33
AAAAACCAAC 1 32.33

Total number of rows: 16694

Table truncated, full table size 311 Kbytes.




Supplementary data files not provided

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