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Status
Public on Mar 20, 2009
Title
mSAGE_Mammary_gland_adenocarcinoma_p53_null_B_19
Sample type
SAGE
Anchor
NlaIII
Tag Count
61610
Tag Length
10
Source name
mammary gland, bulk, adenocarcinoma, adult, female, balb/c, short sage, p53
Organism
Mus musculus
Characteristics
organ/tissue: mammary gland tissue preparation: bulk age: 10 months sex: female cell type: Mammary adenocarcinoma mutations: p53 other information: P53 mammary tumor (T2539) derived from mammary isograft in untreated Balb/C mice.
Biomaterial provider
Daniel Medina, Baylor College of Medicine
Extracted molecule
total RNA
Extraction protocol
N/A
Description
Tagging_enzyme: BsmF I CGAP_Numeric_library_ID: 749 Library_producer: C. Marcelo Aldaz Laboratory: C. Marcelo Aldaz, M.D. Anderson Cancer Center References: http://sciencepark.mdanderson.org/ggeg/
Submission date
Mar 19, 2009
Last update date
Mar 20, 2009
Contact name
Cancer Genome Anatomy Project CGAP
E-mail(s)
cgapbs-r@mail.nih.gov
Phone
301-496-1550
URL
http://cgap.nci.nih.gov/
Organization name
National Cancer Institute
Department
Cancer Genome Anatomy Project
Street address
City
Bethesda
State/province
MD
ZIP/Postal code
20852
Country
USA
Platform ID
GPL11
Series (2)
GSE14
Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15311
Cancer Genome Anatomy Project (CGAP) Mouse SAGE
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAA
165
2678.14
AAAAAAAAAG
4
64.92
AAAAAAAAAT
1
16.23
AAAAAAAAGA
1
16.23
AAAAAAAAGG
1
16.23
AAAAAAAATA
14
227.24
AAAAAAAATT
1
16.23
AAAAAAACAA
1
16.23
AAAAAAAGAA
2
32.46
AAAAAAAGTT
1
16.23
AAAAAAATAA
2
32.46
AAAAAAATGA
1
16.23
AAAAAACACA
1
16.23
AAAAAAGAAA
3
48.69
AAAAAAGATT
1
16.23
AAAAAAGGTA
1
16.23
AAAAAATAAA
14
227.24
AAAAAATAAT
1
16.23
AAAAAATTGA
4
64.92
AAAAACAAGT
2
32.46
Total number of rows: 19822 Table truncated, full table size 370 Kbytes .Supplementary data files not provided