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Sample GSM384318 Query DataSets for GSM384318
Status Public on Mar 20, 2009
Title mSAGE_Mammary_gland_normal_C3(1)SV40Tag_LGD1069_B_73
Sample type SAGE
Anchor NlaIII
Tag Count 59962
Tag Length 10
 
Source name mammary gland, bulk, normal, short sage, female, c3-1, sv40tag, lgd1069, fvb
Organism Mus musculus
Characteristics organ/tissue: mammary gland
tissue preparation: bulk
sex: female
cell type: Normal mammary gland
mutations: C3(1)SV40 Tag
other information: Bulk mammary gland from C3(1)SV40 Tag mice treated with LGD1069 (RXR ligand). Pool
Biomaterial provider Powel Brown, Baylor College of Medicine
Extracted molecule total RNA
Extraction protocol N/A
 
Description Tagging_enzyme: BsmF I
CGAP_Numeric_library_ID: 823
Library_producer: C. Marcelo Aldaz
Laboratory: C. Marcelo Aldaz, M.D. Anderson Cancer Center
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL11
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15311 Cancer Genome Anatomy Project (CGAP) Mouse SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 253 4219.34
AAAAAAAAAC 1 16.68
AAAAAAAAAG 7 116.74
AAAAAAAAAT 1 16.68
AAAAAAAACC 1 16.68
AAAAAAAAGA 3 50.03
AAAAAAAAGT 1 16.68
AAAAAAAATA 3 50.03
AAAAAAACTA 1 16.68
AAAAAAAGAA 4 66.71
AAAAAAATAA 2 33.35
AAAAAAATAG 20 333.54
AAAAAAATGG 1 16.68
AAAAAACAAA 1 16.68
AAAAAACCAG 1 16.68
AAAAAACTCA 1 16.68
AAAAAAGAAA 4 66.71
AAAAAAGCAA 1 16.68
AAAAAAGGTA 2 33.35
AAAAAATAAA 3 50.03

Total number of rows: 17863

Table truncated, full table size 333 Kbytes.




Supplementary data files not provided

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