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Sample GSM384321 Query DataSets for GSM384321
Status Public on Mar 20, 2009
Title mSAGE_Mammary_gland_normal_p53_wildtype_organoid_B_12
Sample type SAGE
Anchor NlaIII
Tag Count 61140
Tag Length 10
 
Source name mammary gland, organoid, normal, bulk, epithelium, adult, short sage, female, balb/c, p53 wild type
Organism Mus musculus
Characteristics organ/tissue: mammary gland
tissue preparation: bulk
age: 15 weeks
sex: female
cell type: Normal mouse mammary epithelium
mutations: p53 wild type
other information: Balb/c mammary epithelium from transplants grown into cleared fat pads of syngeneic hosts. Genotype = P53wild type mammary gland, transplants that received no treatment, harvested 7 wks post-transplatation. Ref. Oncogene (2002) 21, 6366-6376
Biomaterial provider Daniel Medina, Baylor College of Medicine
Extracted molecule total RNA
Extraction protocol N/A
 
Description Tagging_enzyme: BsmF I
CGAP_Numeric_library_ID: 743
Library_producer: C. Marcelo Aldaz
Laboratory: C. Marcelo Aldaz, M.D. Anderson Cancer Center
References: C. M. Aldaz et al., Oncogene 21, 6366-76 (2002) [PUBMED=12214277]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL11
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15311 Cancer Genome Anatomy Project (CGAP) Mouse SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 185 3025.84
AAAAAAAAAG 2 32.71
AAAAAAAAAT 11 179.91
AAAAAAAAGA 1 16.36
AAAAAAAATA 2 32.71
AAAAAAAATG 1 16.36
AAAAAAACAC 1 16.36
AAAAAAACCC 1 16.36
AAAAAAAGAA 2 32.71
AAAAAAAGGT 1 16.36
AAAAAAATAA 3 49.07
AAAAAAATAC 1 16.36
AAAAAAATTT 1 16.36
AAAAAACAAA 1 16.36
AAAAAAGAAA 1 16.36
AAAAAAGGTA 2 32.71
AAAAAATAAA 8 130.85
AAAAAATGTA 1 16.36
AAAAAATTGA 1 16.36
AAAAAATTTA 1 16.36

Total number of rows: 19582

Table truncated, full table size 365 Kbytes.




Supplementary data files not provided
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