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Status
Public on Mar 20, 2009
Title
mSAGE_Mammary_glands_normal_P60_MMD_SM062
Sample type
SAGE
Anchor
NlaIII
Tag Count
135017
Tag Length
10
Source name
mammary gland, pubertal mammary gland, normal, microscope dissected, extracted short sage, female, puberty, 35 days post natal, atlas
Organism
Mus musculus
Characteristics
organ/tissue: mammary gland tissue preparation: microscope dissected age: 35d sex: female cell type: Inguinal without lymph node (L+R)
Biomaterial provider
Cheryl Helgason Lab
Extracted molecule
total RNA
Extraction protocol
N/A
Description
Tagging_enzyme: Mme I CGAP_Numeric_library_ID: 1243 Library_producer: Jas Khattra, Gene Expression Lab Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC
Submission date
Mar 19, 2009
Last update date
Mar 20, 2009
Contact name
Cancer Genome Anatomy Project CGAP
E-mail(s)
cgapbs-r@mail.nih.gov
Phone
301-496-1550
URL
http://cgap.nci.nih.gov/
Organization name
National Cancer Institute
Department
Cancer Genome Anatomy Project
Street address
City
Bethesda
State/province
MD
ZIP/Postal code
20852
Country
USA
Platform ID
GPL11
Series (2)
GSE14
Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15311
Cancer Genome Anatomy Project (CGAP) Mouse SAGE
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAA
193
1429.45
AAAAAAAAAC
1
7.41
AAAAAAAAAG
1
7.41
AAAAAAAAAT
5
37.03
AAAAAAAAGA
2
14.81
AAAAAAACTA
4
29.63
AAAAAAAGAA
3
22.22
AAAAAAATAA
9
66.66
AAAAAAATAG
2
14.81
AAAAAACTGT
2
14.81
AAAAAAGAAT
1
7.41
AAAAAAGCCA
1
7.41
AAAAAAGTCT
2
14.81
AAAAAAGTTT
1
7.41
AAAAAATAAA
7
51.85
AAAAAATAGC
4
29.63
AAAAAATATT
1
7.41
AAAAAATCAT
1
7.41
AAAAAATGGA
4
29.63
AAAAAATGTT
1
7.41
Total number of rows: 26745 Table truncated, full table size 483 Kbytes .Supplementary data files not provided