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Sample GSM384362 Query DataSets for GSM384362
Status Public on Mar 20, 2009
Title mSAGE_Retina_normal_10.5d_CRXnull_B_56
Sample type SAGE
Anchor NlaIII
Tag Count 52612
Tag Length 10
 
Source name retina, bulk, normal, female, male, short sage, 10.5 days post natal, c57bl/6 x 129/sv, crx
Organism Mus musculus
Characteristics organ/tissue: retina
tissue preparation: bulk
age: Postnatal day 10.5
sex: male and female
mutations: Crx
other information: Postnatal 10.5 whole retina of mice homozygous for a mutation in the Crx gene (consists of a number of individuals of different sexes). Strain=C57BL/6 x Sv129.
Extracted molecule total RNA
Extraction protocol N/A
 
Description Tagging_enzyme: BsmF I
CGAP_Numeric_library_ID: 933
Laboratory: Seth Blackshaw, Department of Genetics, Harvard Medical School and Howard Hughes Medical Institute
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL11
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15311 Cancer Genome Anatomy Project (CGAP) Mouse SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 24 456.17
AAAAAAAAAC 1 19.01
AAAAAAAAAG 1 19.01
AAAAAAAAAT 2 38.01
AAAAAAAAGA 1 19.01
AAAAAAAATT 1 19.01
AAAAAAATAG 3 57.02
AAAAAACTAC 1 19.01
AAAAAAGAAA 1 19.01
AAAAAATAAA 3 57.02
AAAAAATAGT 1 19.01
AAAAAATTGA 4 76.03
AAAAACAAAA 1 19.01
AAAAACAAGT 3 57.02
AAAAACAATC 1 19.01
AAAAACAGGT 1 19.01
AAAAACATAT 1 19.01
AAAAACATCT 3 57.02
AAAAACCAAA 1 19.01
AAAAACGGCA 1 19.01

Total number of rows: 18794

Table truncated, full table size 351 Kbytes.




Supplementary data files not provided

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