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Sample GSM384363 Query DataSets for GSM384363
Status Public on Mar 20, 2009
Title mSAGE_Retina_normal_2.5 d_B_52
Sample type SAGE
Anchor NlaIII
Tag Count 56177
Tag Length 10
 
Source name retina, bulk, normal, female, male, short sage, 2.5 days post natal, c57bl/6
Organism Mus musculus
Characteristics organ/tissue: retina
tissue preparation: bulk
age: Postnatal day 2.5
sex: male and female
mutations: Wildtype
other information: Postnatal 2.5 whole retina (consists of a number of individuals of different sexes). Strain=C57BL/6.
Extracted molecule total RNA
Extraction protocol N/A
 
Description Tagging_enzyme: BsmF I
CGAP_Numeric_library_ID: 929
Laboratory: Seth Blackshaw, Department of Genetics, Harvard Medical School and Howard Hughes Medical Institute
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL11
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15311 Cancer Genome Anatomy Project (CGAP) Mouse SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 187 3328.76
AAAAAAAAAC 3 53.40
AAAAAAAAAG 2 35.60
AAAAAAAAAT 2 35.60
AAAAAAAAGA 2 35.60
AAAAAAAAGT 1 17.80
AAAAAAAATT 1 17.80
AAAAAAACCC 1 17.80
AAAAAAACTA 1 17.80
AAAAAAAGAA 4 71.20
AAAAAAATAA 1 17.80
AAAAAAATAC 1 17.80
AAAAAAATAG 7 124.61
AAAAAAATAT 1 17.80
AAAAAAATTA 1 17.80
AAAAAAATTG 1 17.80
AAAAAACACA 2 35.60
AAAAAACACT 1 17.80
AAAAAAGAAA 2 35.60
AAAAAAGGAG 1 17.80

Total number of rows: 20805

Table truncated, full table size 388 Kbytes.




Supplementary data files not provided

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