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Status
Public on Mar 20, 2009
Title
mSAGE_Retina_normal_TS20_B_47
Sample type
SAGE
Anchor
NlaIII
Tag Count
52319
Tag Length
10
Source name
retina, normal, bulk, male, female, mid-gestation embryo, ts20, short sage, cl57bl/6
Organism
Mus musculus
Characteristics
organ/tissue: retina tissue preparation: bulk age: Embryonic day 12.5 sex: male and female mutations: Wildtype other information: Embryonic 12.5 whole retina (consists of a number of individuals of different sexes). Strain=C57BL/6.
Extracted molecule
total RNA
Extraction protocol
N/A
Description
Tagging_enzyme: BsmF I CGAP_Numeric_library_ID: 924 Laboratory: Seth Blackshaw, Department of Genetics, Harvard Medical School and Howard Hughes Medical Institute
Submission date
Mar 19, 2009
Last update date
Mar 20, 2009
Contact name
Cancer Genome Anatomy Project CGAP
E-mail(s)
cgapbs-r@mail.nih.gov
Phone
301-496-1550
URL
http://cgap.nci.nih.gov/
Organization name
National Cancer Institute
Department
Cancer Genome Anatomy Project
Street address
City
Bethesda
State/province
MD
ZIP/Postal code
20852
Country
USA
Platform ID
GPL11
Series (2)
GSE14
Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15311
Cancer Genome Anatomy Project (CGAP) Mouse SAGE
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAA
74
1414.40
AAAAAAAAGA
1
19.11
AAAAAAACTA
2
38.23
AAAAAAAGAA
1
19.11
AAAAAAATAA
2
38.23
AAAAAAATAG
3
57.34
AAAAAACACA
1
19.11
AAAAAACCAA
1
19.11
AAAAAACTGT
1
19.11
AAAAAAGGTA
1
19.11
AAAAAATAAA
5
95.57
AAAAAATACT
1
19.11
AAAAAATGAG
1
19.11
AAAAAATGGA
1
19.11
AAAAACAAAA
7
133.79
AAAAACAAGT
5
95.57
AAAAACAATA
1
19.11
AAAAACAATC
1
19.11
AAAAACAGTA
1
19.11
AAAAACCAAA
2
38.23
Total number of rows: 17843 Table truncated, full table size 333 Kbytes .Supplementary data files not provided