GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM384374

Query DataSets for GSM384374

Status

Public on Mar 20, 2009

Title

mSAGE_Skin_normal_E2F1_null_UV_B_23

Sample type

SAGE

Anchor

NlaIII

Tag Count

53925

Tag Length

Source name

skin, epidermis, normal, bulk, adult, female, short sage, skh-1, e2f1 , uv radiation

Organism

Mus musculus

Characteristics

organ/tissue: skin
tissue preparation: bulk
age: 6-8 wk
sex: female
cell type: Normal epidermis
mutations: E2F1
other information: Epidermal scrapes from the dorsal skin of female SKH-1, Genotype = E2F1 mice, treated with UV light irradiation (8h post-treatment). Pool of various female mice.

Biomaterial provider

David Johnson, M.D. Anderson Cancer Center

Extracted molecule

total RNA

Extraction protocol

N/A

Description

Tagging_enzyme: BsmF I
CGAP_Numeric_library_ID: 766
Library_producer: C. Marcelo Aldaz
Laboratory: C. Marcelo Aldaz, M.D. Anderson Cancer Center
References: http://sciencepark.mdanderson.org/ggeg/

Submission date

Mar 19, 2009

Last update date

Mar 20, 2009

Contact name

Cancer Genome Anatomy Project CGAP

E-mail(s)

cgapbs-r@mail.nih.gov

Phone

301-496-1550

URL

http://cgap.nci.nih.gov/

Organization name

National Cancer Institute

Department

Cancer Genome Anatomy Project

Street address

City

Bethesda

State/province

ZIP/Postal code

20852

Country

USA

Platform ID

GPL11

Series (2)

GSE14	Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15311	Cancer Genome Anatomy Project (CGAP) Mouse SAGE

Data table header descriptions
TAG
COUNT
TPM	tags per million

Data table
TAG	COUNT	TPM
AAAAAAAAAA	170	3152.53
AAAAAAAAAG	2	37.09
AAAAAAAAAT	2	37.09
AAAAAAAAGA	1	18.54
AAAAAAAGAA	2	37.09
AAAAAAATAA	5	92.72
AAAAAAATAG	1	18.54
AAAAAACAAA	1	18.54
AAAAAACCCA	1	18.54
AAAAAAGTAA	2	37.09
AAAAAATAAA	3	55.63
AAAAACAAAA	1	18.54
AAAAACAGGT	1	18.54
AAAAACTCTA	4	74.18
AAAAAGAAAA	1	18.54
AAAAAGCACC	1	18.54
AAAAAGCGAA	2	37.09
AAAAAGCTGC	1	18.54
AAAAAGCTTG	1	18.54
AAAAAGGGTT	1	18.54

Total number of rows: 16058

Table truncated, full table size 300 Kbytes.

Supplementary data files not provided