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Sample GSM384375 Query DataSets for GSM384375
Status Public on Mar 20, 2009
Title mSAGE_Skin_normal_E2F1_wildtype_B_20
Sample type SAGE
Anchor NlaIII
Tag Count 58335
Tag Length 10
 
Source name skin, epidermis, normal, bulk, adult, female, short sage, skh-1, e2f1 wild type
Organism Mus musculus
Characteristics organ/tissue: skin
tissue preparation: bulk
age: 6-8 wk
sex: female
cell type: Normal epidermis
mutations: E2F1 wild type
other information: Epidermal scrapes from the dorsal skin of female SKH-1, Genotype = E2F1 Wild type mice, untreated. Pool of various female mice.
Biomaterial provider David Johnson, M.D. Anderson Cancer Center
Extracted molecule total RNA
Extraction protocol N/A
 
Description Tagging_enzyme: BsmF I
CGAP_Numeric_library_ID: 763
Library_producer: C. Marcelo Aldaz
Laboratory: C. Marcelo Aldaz, M.D. Anderson Cancer Center
References: http://sciencepark.mdanderson.org/ggeg/
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL11
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15311 Cancer Genome Anatomy Project (CGAP) Mouse SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 216 3702.75
AAAAAAAAAC 1 17.14
AAAAAAAAAG 3 51.43
AAAAAAAAGA 1 17.14
AAAAAAAAGG 1 17.14
AAAAAAAATA 1 17.14
AAAAAAACAA 1 17.14
AAAAAAACCA 1 17.14
AAAAAAACTG 1 17.14
AAAAAAAGAA 1 17.14
AAAAAAAGGA 1 17.14
AAAAAAATAA 1 17.14
AAAAAAATAG 5 85.71
AAAAAACACA 1 17.14
AAAAAACACG 1 17.14
AAAAAAGAAA 1 17.14
AAAAAAGCCT 1 17.14
AAAAAAGGTA 2 34.28
AAAAAATAAA 14 239.99
AAAAAATACT 1 17.14

Total number of rows: 17154

Table truncated, full table size 320 Kbytes.




Supplementary data files not provided

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