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Sample GSM384389 Query DataSets for GSM384389
Status Public on Mar 20, 2009
Title mSAGE_Spleen_normal_TS26_MMD_SM010
Sample type SAGE
Anchor NlaIII
Tag Count 113584
Tag Length 10
 
Source name spleen, normal, microscope dissected, short sage, late gestation embryo, ts26, atlas
Organism Mus musculus
Characteristics organ/tissue: spleen
tissue preparation: microscope dissected
age: 18.5 days post coitum. long whiskers. theiler stage 26
sex: unknown
Biomaterial provider Cheryl Helgason Lab
Extracted molecule total RNA
Extraction protocol N/A
 
Description Tagging_enzyme: BsmF I
CGAP_Numeric_library_ID: 636
Library_producer: Jas Khattra, Gene Expression Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL11
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15311 Cancer Genome Anatomy Project (CGAP) Mouse SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 256 2253.84
AAAAAAAAAC 1 8.80
AAAAAAAAAG 2 17.61
AAAAAAAAAT 2 17.61
AAAAAAAAGA 3 26.41
AAAAAAAAGG 2 17.61
AAAAAAAATA 2 17.61
AAAAAAAATC 1 8.80
AAAAAAAATG 1 8.80
AAAAAAACAA 1 8.80
AAAAAAACTA 4 35.22
AAAAAAAGAA 2 17.61
AAAAAAAGTA 1 8.80
AAAAAAATAA 4 35.22
AAAAAAATAG 9 79.24
AAAAAAATAT 1 8.80
AAAAAAATGT 1 8.80
AAAAAAATTA 1 8.80
AAAAAACATA 1 8.80
AAAAAACGAA 1 8.80

Total number of rows: 27920

Table truncated, full table size 502 Kbytes.




Supplementary data files not provided

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