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Sample GSM384404 Query DataSets for GSM384404
Status Public on Mar 20, 2009
Title mSAGE_Testis_normal_somatic_cell_adult_busulphan_B
Sample type SAGE
Anchor NlaIII
Tag Count 81482
Tag Length 10
 
Source name testis, somatic cell, normal, bulk, short sage, adult, busulphan
Organism Mus musculus
Characteristics organ/tissue: testis
tissue preparation: bulk
sex: unknown
other information: Adult mice were treated with busulphan (30mg/Kg). RNA was extracted from testes 60 days later. At this stage the testes were largely devoid of germ-cells. (NCBI name: Adult testis -somatic cells)
Extracted molecule total RNA
Extraction protocol N/A
 
Description Tagging_enzyme: BsmF I
CGAP_Numeric_library_ID: 1091
Laboratory: Peter J. O'Shaughnessy, Lynne Fleming , Paul J. Baker, Gary Jackson, Heather Johnston
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL11
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15311 Cancer Genome Anatomy Project (CGAP) Mouse SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 82 1006.36
AAAAAAAAAG 4 49.09
AAAAAAAAAT 3 36.82
AAAAAAAACA 1 12.27
AAAAAAACAG 1 12.27
AAAAAAACTA 2 24.55
AAAAAAAGAA 1 12.27
AAAAAAATAA 1 12.27
AAAAAAATTG 1 12.27
AAAAAACAGA 1 12.27
AAAAAAGACC 1 12.27
AAAAAATAAA 8 98.18
AAAAAATAGA 1 12.27
AAAAACAAGA 1 12.27
AAAAACAATT 1 12.27
AAAAACCACC 1 12.27
AAAAACCATC 1 12.27
AAAAACGTGC 1 12.27
AAAAACTAGG 1 12.27
AAAAAGAAAA 2 24.55

Total number of rows: 22810

Table truncated, full table size 425 Kbytes.




Supplementary data files not provided
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