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Sample GSM384405 Query DataSets for GSM384405
Status Public on Mar 20, 2009
Title mSAGE_Testis_normal_somatic_cell_TS26_B_Wv/Wv
Sample type SAGE
Anchor NlaIII
Tag Count 61939
Tag Length 10
 
Source name testis, somatic cell, normal, bulk, short sage, late gestation embryo
Organism Mus musculus
Characteristics organ/tissue: testis
tissue preparation: bulk
sex: unknown
other information: RNA was extracted from testes of Wv/Wv fetuses at day 18 post coitum. These testes are largely devoid of germ cells and SAGE library will represent somatic cells of the fetal testis. (NCBI name: fetal testis somatic cells)
Extracted molecule total RNA
Extraction protocol N/A
 
Description Tagging_enzyme: BsmF I
CGAP_Numeric_library_ID: 1090
Laboratory: Peter J. O'Shaughnessy, Lynne Fleming , Paul J. Baker, Gary Jackson, Heather Johnston
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL11
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15311 Cancer Genome Anatomy Project (CGAP) Mouse SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 15 242.17
AAAAAAAAAC 4 64.58
AAAAAAAAAG 2 32.29
AAAAAAAAAT 2 32.29
AAAAAAAACA 1 16.14
AAAAAAAAGG 1 16.14
AAAAAAAATG 1 16.14
AAAAAAAGCC 1 16.14
AAAAAAAGGT 1 16.14
AAAAAAAGTA 1 16.14
AAAAAAATAG 2 32.29
AAAAAAATAT 1 16.14
AAAAAAATTA 1 16.14
AAAAAACAAA 1 16.14
AAAAAACCAG 1 16.14
AAAAAAGAAA 2 32.29
AAAAAAGAGA 2 32.29
AAAAAAGGTG 2 32.29
AAAAAAGTTG 1 16.14
AAAAAATAGT 1 16.14

Total number of rows: 42038

Table truncated, full table size 780 Kbytes.




Supplementary data files not provided
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