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Sample GSM384411 Query DataSets for GSM384411
Status Public on Mar 20, 2009
Title mSAGE_Urogenital_sinus_normal_TS18_MMD_SM065
Sample type SAGE
Anchor NlaIII
Tag Count 143619
Tag Length 10
 
Source name embryonic tissue, male urogenital sinus epithelium, microscope dissected, normal, male, extracted short sage, ts24, late gestation embryo, atlas
Organism Mus musculus
Characteristics organ/tissue: embryonic tissue
tissue preparation: microscope dissected
age: TS24
sex: male
cell type: urogenital sinus epithelium
Biomaterial provider Cheryl Helgason Lab
Extracted molecule total RNA
Extraction protocol N/A
 
Description Tagging_enzyme: Mme I
CGAP_Numeric_library_ID: 1246
Library_producer: Jas Khattra, Gene Expression Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL11
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15311 Cancer Genome Anatomy Project (CGAP) Mouse SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 274 1907.83
AAAAAAAAAC 1 6.96
AAAAAAAAAG 1 6.96
AAAAAAAAAT 35 243.70
AAAAAAAATA 2 13.93
AAAAAAAATG 7 48.74
AAAAAAACAA 1 6.96
AAAAAAACTA 5 34.81
AAAAAAACTT 1 6.96
AAAAAAAGAA 1 6.96
AAAAAAAGAC 1 6.96
AAAAAAAGTT 1 6.96
AAAAAAATAA 18 125.33
AAAAAAATAG 6 41.78
AAAAAAATTA 1 6.96
AAAAAACAAA 1 6.96
AAAAAACTGG 1 6.96
AAAAAAGCTT 1 6.96
AAAAAAGTCT 1 6.96
AAAAAATAAA 29 201.92

Total number of rows: 30220

Table truncated, full table size 547 Kbytes.




Supplementary data files not provided

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