NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM385945 Query DataSets for GSM385945
Status Public on Mar 27, 2009
Title E6.5 retina RCAS c-hairy1 rep1
Sample type RNA
 
Source name E6.5 retina expressing c-hairy1 (1)
Organism Gallus gallus
Characteristics protocol: expression of c-hairy1
age: E6.5
tissue: retina
Extracted molecule polyA RNA
Extraction protocol Tissues were homogenized with Trizol reagents.
Total RNA was purified following the manufacturer's instruction.
polyA RNA was purified on Oligo-dT column.
Label 3' amplification Reagents for IVT
Label protocol Labeling reaction was carried out following the manufacturer's instruction.
 
Hybridization protocol Hybridization was carried out following the manufacturer's instruction.
Scan protocol Scan was carried out following the manufacturer's instruction.
Description E1.5 retinas were electroporated with RCAS c-hairy1
Retinas were recovered at E6.5
c-hairy1 inhibits neuronal differentiation
Data processing Affymetrix GCOS 1.4
 
Submission date Mar 25, 2009
Last update date Sep 23, 2010
Contact name Shinichi Nakagawa
E-mail(s) nakagawas@riken.jp
Phone +81-48-467-4227
Fax +81-48-467-4517
Organization name RIKEN ASI
Lab Nakagawa Initiative Research Unit
Street address Hirosawa 2-1
City Wako
State/province Saitama
ZIP/Postal code 351-0198
Country Japan
 
Platform ID GPL3213
Series (1)
GSE15382 Gene expression profile of embryonic retinas expressing c-hairy1, Delta-1, or Wnt2b

Data table header descriptions
ID_REF
VALUE MAS 5 signal from GCOS 1.4
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 96.4168 P 0.000753643
AFFX-BioB-M_at 130.504 P 0.000662269
AFFX-BioB-3_at 133.247 P 4.42873e-05
AFFX-BioC-5_at 347.054 P 7.00668e-05
AFFX-BioC-3_at 407.962 P 4.42873e-05
AFFX-BioDn-5_at 839.407 P 4.42873e-05
AFFX-BioDn-3_at 1663.22 P 0.000126798
AFFX-CreX-5_at 4395.85 P 5.16732e-05
AFFX-CreX-3_at 6189.16 P 4.42873e-05
AFFX-DapX-5_at 21.5773 P 0.026111
AFFX-DapX-M_at 62.4025 P 0.00227496
AFFX-DapX-3_at 83.2498 P 0.00110197
AFFX-LysX-5_at 8.33226 P 0.0429619
AFFX-LysX-M_at 23.5269 A 0.185131
AFFX-LysX-3_at 15.1545 P 0.0464816
AFFX-PheX-5_at 3.7097 A 0.544587
AFFX-PheX-M_at 2.50232 A 0.783476
AFFX-PheX-3_at 8.95901 A 0.470241
AFFX-ThrX-5_at 21.2413 A 0.216524
AFFX-ThrX-M_at 22.6932 P 0.0464816

Total number of rows: 38535

Table truncated, full table size 1490 Kbytes.




Supplementary file Size Download File type/resource
GSM385945.CEL.gz 5.9 Mb (ftp)(http) CEL
GSM385945.CHP.gz 9.1 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap