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Sample GSM385946 Query DataSets for GSM385946
Status Public on Mar 27, 2009
Title E6.5 retina RCAS c-hairy1 rep2
Sample type RNA
 
Source name E6.5 retina expressing c-hairy1 (2)
Organism Gallus gallus
Characteristics protocol: expression of c-hairy1
age: E6.5
tissue: retina
Extracted molecule polyA RNA
Extraction protocol Tissues were homogenized with Trizol reagents.
Total RNA was purified following the manufacturer's instruction.
polyA RNA was purified on Oligo-dT column.
Label 3' amplification Reagents for IVT
Label protocol Labeling reaction was carried out following the manufacturer's instruction.
 
Hybridization protocol Hybridization was carried out following the manufacturer's instruction.
Scan protocol Scan was carried out following the manufacturer's instruction.
Description E1.5 retinas were electroporated with RCAS c-hairy1. Retinas were recovered at E6.5.
c-hairy1 inhibits neuronal differentiation
Data processing Affymetrix GCOS 1.4
 
Submission date Mar 25, 2009
Last update date Sep 23, 2010
Contact name Shinichi Nakagawa
E-mail(s) nakagawas@riken.jp
Phone +81-48-467-4227
Fax +81-48-467-4517
Organization name RIKEN ASI
Lab Nakagawa Initiative Research Unit
Street address Hirosawa 2-1
City Wako
State/province Saitama
ZIP/Postal code 351-0198
Country Japan
 
Platform ID GPL3213
Series (1)
GSE15382 Gene expression profile of embryonic retinas expressing c-hairy1, Delta-1, or Wnt2b

Data table header descriptions
ID_REF
VALUE MAS 5 signal from GCOS 1.4
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 103.561 P 0.000753643
AFFX-BioB-M_at 129.062 P 0.000146581
AFFX-BioB-3_at 111.107 P 4.42873e-05
AFFX-BioC-5_at 293.146 P 5.16732e-05
AFFX-BioC-3_at 411.384 P 6.02111e-05
AFFX-BioDn-5_at 704.239 P 4.42873e-05
AFFX-BioDn-3_at 1492.13 P 0.000126798
AFFX-CreX-5_at 4297.36 P 5.16732e-05
AFFX-CreX-3_at 5693.64 P 4.42873e-05
AFFX-DapX-5_at 25.9908 P 0.0200219
AFFX-DapX-M_at 99.4991 P 0.000753643
AFFX-DapX-3_at 107.427 P 8.14279e-05
AFFX-LysX-5_at 14.3457 P 0.0151826
AFFX-LysX-M_at 20.5462 A 0.275146
AFFX-LysX-3_at 20.7468 P 0.0138105
AFFX-PheX-5_at 5.76346 A 0.60308
AFFX-PheX-M_at 2.60636 A 0.52976
AFFX-PheX-3_at 29.2594 A 0.0780018
AFFX-ThrX-5_at 3.49083 A 0.868639
AFFX-ThrX-M_at 26.4882 A 0.165861

Total number of rows: 38535

Table truncated, full table size 1492 Kbytes.




Supplementary file Size Download File type/resource
GSM385946.CEL.gz 5.8 Mb (ftp)(http) CEL
GSM385946.CHP.gz 9.2 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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