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Sample GSM385947 Query DataSets for GSM385947
Status Public on Mar 27, 2009
Title E6.5 retina RCAS control rep1
Sample type RNA
 
Source name E6.5 retina control (1)
Organism Gallus gallus
Characteristics protocol: control
age: E6.5
tissue: retina
Extracted molecule polyA RNA
Extraction protocol Tissues were homogenized with Trizol reagents.
Total RNA was purified following the manufacturer's instruction.
polyA RNA was purified on Oligo-dT column.
Label 3' amplification Reagents for IVT
Label protocol Labeling reaction was carried out following the manufacturer's instruction.
 
Hybridization protocol Hybridization was carried out following the manufacturer's instruction.
Scan protocol Scan was carried out following the manufacturer's instruction.
Description E1.5 retinas were electroporated with RCAS. Retinas were recovered at E6.5.
RCAS provirus vector with no insert was used as a control.
Data processing Affymetrix GCOS 1.4
 
Submission date Mar 25, 2009
Last update date Sep 23, 2010
Contact name Shinichi Nakagawa
E-mail(s) nakagawas@riken.jp
Phone +81-48-467-4227
Fax +81-48-467-4517
Organization name RIKEN ASI
Lab Nakagawa Initiative Research Unit
Street address Hirosawa 2-1
City Wako
State/province Saitama
ZIP/Postal code 351-0198
Country Japan
 
Platform ID GPL3213
Series (1)
GSE15382 Gene expression profile of embryonic retinas expressing c-hairy1, Delta-1, or Wnt2b

Data table header descriptions
ID_REF
VALUE MAS 5 signal from GCOS 1.4
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 141.59 P 0.000855711
AFFX-BioB-M_at 131.186 P 0.00141043
AFFX-BioB-3_at 117.567 P 4.42873e-05
AFFX-BioC-5_at 324.779 P 5.16732e-05
AFFX-BioC-3_at 386.018 P 5.16732e-05
AFFX-BioDn-5_at 777.327 P 4.42873e-05
AFFX-BioDn-3_at 1623.76 P 0.000146581
AFFX-CreX-5_at 4303.01 P 5.16732e-05
AFFX-CreX-3_at 6015.82 P 4.42873e-05
AFFX-DapX-5_at 34.9068 P 0.0218927
AFFX-DapX-M_at 85.4457 P 0.000972149
AFFX-DapX-3_at 130.369 P 0.0012475
AFFX-LysX-5_at 6.36942 A 0.617411
AFFX-LysX-M_at 6.42439 A 0.686277
AFFX-LysX-3_at 26.5537 P 0.00933744
AFFX-PheX-5_at 2.36643 A 0.804734
AFFX-PheX-M_at 11.3744 A 0.440646
AFFX-PheX-3_at 20.0013 A 0.205732
AFFX-ThrX-5_at 9.76015 A 0.686277
AFFX-ThrX-M_at 5.09683 A 0.354453

Total number of rows: 38535

Table truncated, full table size 1490 Kbytes.




Supplementary file Size Download File type/resource
GSM385947.CEL.gz 5.9 Mb (ftp)(http) CEL
GSM385947.CHP.gz 9.3 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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