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Sample GSM385951 Query DataSets for GSM385951
Status Public on Mar 27, 2009
Title E6.5 retina RCAS Wnt2b rep1
Sample type RNA
 
Source name E6.5 retina expressing Wnt2b (1)
Organism Gallus gallus
Characteristics protocol: expression of Wnt2b
age: E6.5
tissue: retina
Extracted molecule polyA RNA
Extraction protocol Tissues were homogenized with Trizol reagents.
Total RNA was purified following the manufacturer's instruction.
polyA RNA was purified on Oligo-dT column.
Label 3' amplification Reagents for IVT
Label protocol Labeling reaction was carried out following the manufacturer's instruction.
 
Hybridization protocol Hybridization was carried out following the manufacturer's instruction.
Scan protocol Scan was carried out following the manufacturer's instruction.
Description E1.5 retinas were electroporated with RCAS Wnt2b. Retinas were recovered at E6.5.
Wnt2b inhibits neuronal differentiation
Data processing Affymetrix GCOS 1.4
 
Submission date Mar 25, 2009
Last update date Sep 23, 2010
Contact name Shinichi Nakagawa
E-mail(s) nakagawas@riken.jp
Phone +81-48-467-4227
Fax +81-48-467-4517
Organization name RIKEN ASI
Lab Nakagawa Initiative Research Unit
Street address Hirosawa 2-1
City Wako
State/province Saitama
ZIP/Postal code 351-0198
Country Japan
 
Platform ID GPL3213
Series (1)
GSE15382 Gene expression profile of embryonic retinas expressing c-hairy1, Delta-1, or Wnt2b

Data table header descriptions
ID_REF
VALUE MAS 5 signal from GCOS 1.4
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 116.053 P 0.000753643
AFFX-BioB-M_at 149.125 P 0.00179591
AFFX-BioB-3_at 113.075 P 6.02111e-05
AFFX-BioC-5_at 336.331 P 5.16732e-05
AFFX-BioC-3_at 379.423 P 5.16732e-05
AFFX-BioDn-5_at 737.104 P 5.16732e-05
AFFX-BioDn-3_at 1460.16 P 0.000146581
AFFX-CreX-5_at 4226.09 P 5.16732e-05
AFFX-CreX-3_at 5899.52 P 4.42873e-05
AFFX-DapX-5_at 31.3483 P 0.00401721
AFFX-DapX-M_at 99.3927 P 0.000753643
AFFX-DapX-3_at 157.138 P 0.000146581
AFFX-LysX-5_at 21.6999 P 0.00227496
AFFX-LysX-M_at 11.5935 A 0.617401
AFFX-LysX-3_at 32.3551 P 0.00110197
AFFX-PheX-5_at 2.42163 A 0.470241
AFFX-PheX-M_at 2.10614 A 0.876428
AFFX-PheX-3_at 32.7911 P 0.00762003
AFFX-ThrX-5_at 5.42393 A 0.794268
AFFX-ThrX-M_at 9.62043 A 0.382599

Total number of rows: 38535

Table truncated, full table size 1492 Kbytes.




Supplementary file Size Download File type/resource
GSM385951.CEL.gz 5.9 Mb (ftp)(http) CEL
GSM385951.CHP.gz 9.1 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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