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Status
Public on Jan 10, 2005
Title
ANOXIA+SUCROSE EXPERIMENT 2
Sample type
RNA
Source name
4 days old, dark grown seedlings
Organism
Arabidopsis thaliana
Extracted molecule
total RNA
Description
Arabidopsis thaliana ecotype Columbia glabra were grown for 4 days in the dark at 23°C in multiwell plates containing half-strenght murashige skoog medium without added sucrose. Sample was subsequently kept for 6h under anoxia in the presence of 90mM sucrose. RNA was extracted using a Ambion RNaqueous kit. Targets were produced using standard Affymetrix procedures from about 10ug of total RNA. Each independent experiment consisted of four replicated seedlings cultures, pooled after RNA extraction. Keywords = Arabidopsis, anoxic, sucrose, seedling, dark grown
Submission date
Jan 07, 2005
Last update date
Aug 28, 2018
Contact name
Pierdomenico Perata
E-mail(s)
p.perata@sssup.it
Phone
+39050881901
Organization name
Sant'Anna School of Advanced Studies
Department
Institute of Life Sciences
Lab
PlantLab
Street address
Via Guidiccioni 8-10
City
San Giuliano Terme
State/province
Pisa
ZIP/Postal code
56010
Country
Italy
Platform ID
GPL198
Series (1)
GSE2133
Effects of anoxia and sucrose on seedling growth
Relations
Reanalyzed by
GSE119083
Data table header descriptions
ID_REF
VALUE
'signal' a measure of the abundance of a transcript (not scaled)
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
73.1
P
0.004017
AFFX-BioB-M_at
68.6
P
0.00007
AFFX-BioB-3_at
64.5
P
0.00039
AFFX-BioC-5_at
220.4
P
0.000081
AFFX-BioC-3_at
126.6
P
0.00007
AFFX-BioDn-5_at
160.9
P
0.000044
AFFX-BioDn-3_at
900.3
P
0.000044
AFFX-CreX-5_at
1819.7
P
0.000044
AFFX-CreX-3_at
3512.5
P
0.000044
AFFX-DapX-5_at
4.6
A
0.41138
AFFX-DapX-M_at
12.1
A
0.165861
AFFX-DapX-3_at
1.4
A
0.9273
AFFX-LysX-5_at
0.6
A
0.957038
AFFX-LysX-M_at
1.2
A
0.945787
AFFX-LysX-3_at
6.3
A
0.313723
AFFX-PheX-5_at
0.6
A
0.953518
AFFX-PheX-M_at
1
A
0.921998
AFFX-PheX-3_at
7.7
A
0.48511
AFFX-ThrX-5_at
1.3
A
0.772364
AFFX-ThrX-M_at
4.9
A
0.455413
Total number of rows: 22810 Table truncated, full table size 578 Kbytes .Supplementary file
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