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Sample GSM38659 Query DataSets for GSM38659
Status Public on Aug 26, 2005
Title Expression data of colon cancer 307B
Sample type RNA
 
Source name Patient ID307-B
Organism Homo sapiens
Characteristics patient id: 307
age (years): 80
sex: Female
msi status: Negative
mlh1 methylation: No
braf gene: Wild
kras2 gene: Wild
tumor site: Proximal
dukes stage: C
pathology: Mod
axin2 methylation: No
Extracted molecule total RNA
Extraction protocol mRNA was amplified from the specimens and was used to prepare biotin-labeled cRNA for hybridization.
 
Description Characteristics definitions: Well=well-differentiated adenocarcinoma; Mod=moderately differentiated adenocarcinoma; Sig=signet ring cell adenocarcinoma; Muc=mucinous adenocarcinoma. Methylation of AXIN2 promoter region was determined by COBRA method.
 
Submission date Jan 08, 2005
Last update date May 22, 2009
Contact name Hiroyuki Mano
E-mail(s) hmano@jichi.ac.jp
Phone +81-285-58-7449
Fax +81-285-44-7322
Organization name Jichi Medical University
Department Division of Functional Genomics
Street address 3311-1 Yakushiji
City Shimotsukeshi
State/province Tochigi
ZIP/Postal code 329-0498
Country Japan
 
Platform ID GPL97
Series (1)
GSE2138 Colon cancer profiling

Data table header descriptions
ID_REF
VALUE Expression intensities
ABS_CALL Present call

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 42.1 P
AFFX-BioB-M_at 76.9 P
AFFX-BioB-3_at 48.5 P
AFFX-BioC-5_at 114.7 P
AFFX-BioC-3_at 85.1 P
AFFX-BioDn-5_at 85 P
AFFX-BioDn-3_at 443.8 P
AFFX-CreX-5_at 793.6 P
AFFX-CreX-3_at 1421.8 P
AFFX-DapX-5_at 5 A
AFFX-DapX-M_at 9.1 A
AFFX-DapX-3_at 0.5 A
AFFX-LysX-5_at 7.3 A
AFFX-LysX-M_at 4.1 A
AFFX-LysX-3_at 7.1 P
AFFX-PheX-5_at 2.3 A
AFFX-PheX-M_at 4 A
AFFX-PheX-3_at 14.4 A
AFFX-ThrX-5_at 4.4 A
AFFX-ThrX-M_at 1.5 A

Total number of rows: 22645

Table truncated, full table size 368 Kbytes.




Supplementary data files not provided

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