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Sample GSM396144 Query DataSets for GSM396144
Status Public on Apr 14, 2010
Title .SAL_I_1
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics timepoint: 1h
drug: Saline
group no.: 15
large batch: X
plate: 1957998115
hybridization batch: I
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 1
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 22, 2009
Last update date May 02, 2009
Contact name Marcin Piechota
E-mail(s) marpiech@if-pan.krakow.pl
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6105
Series (1)
GSE15774 Transcriptional networks regulated by drugs of abuse in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_2431248 7.337291435
ILMN_3160339 6.886342925
ILMN_3161159 7.531775495
ILMN_2758597 6.895163012
ILMN_2644469 13.07021083
ILMN_2656393 8.010683569
ILMN_3160634 7.479531225
ILMN_3161394 11.0178595
ILMN_2610322 6.592553692
ILMN_2741606 7.26024581
ILMN_1247267 10.20488982
ILMN_2594811 7.131892673
ILMN_2689425 6.534358573
ILMN_2745565 6.430679708
ILMN_1212992 6.625092954
ILMN_2629183 6.379680027
ILMN_1251092 8.84538693
ILMN_2715803 10.49057822
ILMN_2762509 12.39901629
ILMN_2496817 9.825401938

Total number of rows: 46632

Table truncated, full table size 1133 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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